Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01217

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.015 mg/ml
1,342,535	+				+0.6
1,342,541	+				+0.8
1,342,546	+				-1.1
1,342,558	+				+0.3
1,342,558	+				-1.6
1,342,566	-				+0.6
1,342,566	-				-0.5
1,342,573	+				-1.9
1,342,581	-				-0.3
1,342,581	-				-0.6
1,342,610	-				-0.4
1,342,676	-		CCNA_01216	0.15	-1.2
1,342,692	+		CCNA_01216	0.17	-1.1
1,342,700	-		CCNA_01216	0.18	-0.8
1,342,720	-		CCNA_01216	0.20	-0.8
1,342,727	-		CCNA_01216	0.21	-0.9
1,342,727	-		CCNA_01216	0.21	+0.3
1,342,770	+		CCNA_01216	0.25	-1.3
1,342,783	-		CCNA_01216	0.27	+0.3
1,342,826	+		CCNA_01216	0.31	-0.3
1,342,826	+		CCNA_01216	0.31	+0.6
1,342,855	-		CCNA_01216	0.35	+0.6
1,342,877	-		CCNA_01216	0.37	-1.0
1,342,877	-		CCNA_01216	0.37	-0.1
1,342,879	-		CCNA_01216	0.37	-0.8
1,342,909	-		CCNA_01216	0.40	-1.2
1,342,914	-		CCNA_01216	0.41	-1.7
1,342,928	+		CCNA_01216	0.42	+0.1
1,342,936	-		CCNA_01216	0.43	-2.7
1,342,940	+		CCNA_01216	0.44	-1.3
1,342,946	-		CCNA_01216	0.44	-1.5
1,342,948	-		CCNA_01216	0.45	+1.4
1,342,961	-		CCNA_01216	0.46	+2.1
1,342,961	-		CCNA_01216	0.46	-1.2
1,342,967	+		CCNA_01216	0.47	-0.2
1,342,972	+		CCNA_01216	0.47	-1.1
1,343,010	+		CCNA_01216	0.51	-2.0
1,343,054	-		CCNA_01216	0.56	+0.1
1,343,093	+		CCNA_01216	0.60	-1.5
1,343,093	-		CCNA_01216	0.60	-1.8
1,343,138	+		CCNA_01216	0.65	-0.6
1,343,242	-		CCNA_01216	0.77	-0.5
1,343,274	-		CCNA_01216	0.80	+1.7
1,343,290	-		CCNA_01216	0.82	-1.8
1,343,307	+		CCNA_01216	0.84	-0.1
1,343,315	-		CCNA_01216	0.85	-0.3
1,343,321	+		CCNA_01216	0.85	+0.9
1,343,321	+		CCNA_01216	0.85	-1.2
1,343,321	+		CCNA_01216	0.85	-1.1
1,343,321	+		CCNA_01216	0.85	+2.3
1,343,321	+		CCNA_01216	0.85	-0.1
1,343,329	-		CCNA_01216	0.86	-0.8
1,343,329	-		CCNA_01216	0.86	-1.0
1,343,389	+				-0.6
1,343,389	+				-2.3
1,343,397	-				-2.0
1,343,431	+				-1.8
1,343,451	+				-0.6
1,343,482	+				-0.3
1,343,490	-				+0.1
1,343,500	-				+1.0
1,343,509	+				+0.1
1,343,512	-				+2.0
1,343,517	-				+1.8
1,343,518	+				+0.0
1,343,526	-				-0.9
1,343,528	-				-0.6
1,343,537	-				-0.1
1,343,627	+				-1.1
1,343,638	+				+0.6
1,343,649	+		CCNA_01217	0.10	-0.3
1,343,688	-		CCNA_01217	0.14	-0.2
1,343,754	+		CCNA_01217	0.20	-1.3
1,343,754	+		CCNA_01217	0.20	-0.2
1,343,762	-		CCNA_01217	0.20	-1.6
1,343,807	+		CCNA_01217	0.24	+1.2
1,343,854	+		CCNA_01217	0.29	-1.1
1,343,901	+		CCNA_01217	0.33	+0.3
1,343,901	+		CCNA_01217	0.33	-0.9
1,343,901	+		CCNA_01217	0.33	-1.1
1,343,901	+		CCNA_01217	0.33	-2.7
1,343,901	+		CCNA_01217	0.33	-0.4
1,343,901	+		CCNA_01217	0.33	-1.6
1,343,901	+		CCNA_01217	0.33	-0.4
1,343,901	+		CCNA_01217	0.33	-0.9
1,343,901	+		CCNA_01217	0.33	+0.2
1,343,901	+		CCNA_01217	0.33	-0.1
1,343,901	+		CCNA_01217	0.33	-1.3
1,343,901	+		CCNA_01217	0.33	-0.8
1,343,901	+		CCNA_01217	0.33	+0.4
1,343,901	+		CCNA_01217	0.33	-0.7
1,343,901	+		CCNA_01217	0.33	-0.8
1,343,901	+		CCNA_01217	0.33	-1.4
1,343,901	+		CCNA_01217	0.33	+0.3
1,343,901	+		CCNA_01217	0.33	-1.8
1,343,901	+		CCNA_01217	0.33	-1.4
1,343,901	+		CCNA_01217	0.33	+0.1
1,343,901	+		CCNA_01217	0.33	-1.7
1,343,901	+		CCNA_01217	0.33	-0.2
1,343,901	+		CCNA_01217	0.33	-1.2
1,343,901	+		CCNA_01217	0.33	-0.5
1,343,909	-		CCNA_01217	0.33	-0.2
1,343,909	-		CCNA_01217	0.33	-1.3
1,343,909	-		CCNA_01217	0.33	+0.8
1,343,909	-		CCNA_01217	0.33	-2.3
1,343,909	-		CCNA_01217	0.33	-0.1
1,343,909	-		CCNA_01217	0.33	-0.2
1,343,909	-		CCNA_01217	0.33	-0.4
1,343,909	-		CCNA_01217	0.33	-0.2
1,343,937	+		CCNA_01217	0.36	-2.0
1,343,973	+		CCNA_01217	0.39	-0.9
1,343,973	+		CCNA_01217	0.39	+1.4
1,343,987	+		CCNA_01217	0.40	-1.1
1,343,987	+		CCNA_01217	0.40	+0.1
1,344,027	+		CCNA_01217	0.44	-0.1
1,344,062	-		CCNA_01217	0.47	-0.3
1,344,143	+		CCNA_01217	0.54	+0.7
1,344,156	+		CCNA_01217	0.55	-0.0
1,344,168	+		CCNA_01217	0.56	-0.7
1,344,168	+		CCNA_01217	0.56	-0.6
1,344,168	+		CCNA_01217	0.56	+0.3
1,344,173	+		CCNA_01217	0.57	+0.4
1,344,178	+		CCNA_01217	0.57	-0.1
1,344,178	+		CCNA_01217	0.57	+0.3
1,344,207	+		CCNA_01217	0.60	-1.7
1,344,229	-		CCNA_01217	0.62	-1.9
1,344,231	+		CCNA_01217	0.62	-0.1
1,344,241	+		CCNA_01217	0.63	-0.6
1,344,361	+		CCNA_01217	0.73	-0.5
1,344,397	+		CCNA_01217	0.77	-2.1
1,344,425	+		CCNA_01217	0.79	+0.1
1,344,488	+		CCNA_01217	0.85	+0.2
1,344,540	+		CCNA_01217	0.89	-1.4
1,344,542	+		CCNA_01217	0.90	-0.3
1,344,573	+				-0.8
1,344,573	+				-1.9
1,344,573	+				-0.6
1,344,581	-				-0.8
1,344,636	+				-0.6
1,344,664	+				+0.6
1,344,664	+				+1.1
1,344,672	-				-0.8
1,344,672	-				-0.1
1,344,691	-		CCNA_01218	0.11	-1.8
1,344,750	-		CCNA_01218	0.17	-1.1
1,344,800	+		CCNA_01218	0.22	+1.8
1,344,800	+		CCNA_01218	0.22	-1.2
1,344,800	+		CCNA_01218	0.22	+1.6
1,344,800	+		CCNA_01218	0.22	+0.5
1,344,808	-		CCNA_01218	0.23	-2.0
1,344,915	+		CCNA_01218	0.34	-0.5
1,345,056	-		CCNA_01218	0.48	-1.9
1,345,101	+		CCNA_01218	0.53	-0.6
1,345,109	-		CCNA_01218	0.53	-1.1
1,345,151	+		CCNA_01218	0.58	+0.8
1,345,216	+		CCNA_01218	0.64	-0.6
1,345,243	-		CCNA_01218	0.67	-0.6
1,345,255	+		CCNA_01218	0.68	-0.2
1,345,258	-		CCNA_01218	0.68	-0.9
1,345,348	-		CCNA_01218	0.78	-1.1
1,345,375	-		CCNA_01218	0.80	-0.7
1,345,381	+		CCNA_01218	0.81	-0.4
1,345,389	-		CCNA_01218	0.82	-1.5
1,345,446	-		CCNA_01218	0.87	-0.7
1,345,518	-				-0.7
1,345,540	+				-1.0
1,345,541	+				+0.4
1,345,587	+				-0.4
1,345,610	-				-1.4