Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01208

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.015 mg/ml
1,333,888	+		CCNA_01207	0.16	+0.5
1,333,913	-		CCNA_01207	0.19	-0.6
1,333,913	-		CCNA_01207	0.19	-0.1
1,333,913	-		CCNA_01207	0.19	-1.3
1,333,955	+		CCNA_01207	0.22	-0.9
1,333,960	+		CCNA_01207	0.23	+0.5
1,333,960	+		CCNA_01207	0.23	-1.4
1,333,968	-		CCNA_01207	0.23	+0.6
1,333,968	-		CCNA_01207	0.23	-0.4
1,333,974	-		CCNA_01207	0.24	-1.7
1,333,983	+		CCNA_01207	0.24	+1.9
1,333,988	+		CCNA_01207	0.25	+1.1
1,333,993	+		CCNA_01207	0.25	+1.6
1,334,011	-		CCNA_01207	0.27	-0.2
1,334,048	+		CCNA_01207	0.30	-0.0
1,334,056	-		CCNA_01207	0.31	-1.0
1,334,062	-		CCNA_01207	0.31	-0.7
1,334,071	+		CCNA_01207	0.32	+1.0
1,334,071	+		CCNA_01207	0.32	+1.2
1,334,139	+		CCNA_01207	0.38	-1.3
1,334,139	+		CCNA_01207	0.38	-1.2
1,334,139	+		CCNA_01207	0.38	-2.0
1,334,139	+		CCNA_01207	0.38	+0.8
1,334,147	-		CCNA_01207	0.38	-2.6
1,334,181	-		CCNA_01207	0.41	-0.3
1,334,234	-		CCNA_01207	0.46	+0.6
1,334,337	+		CCNA_01207	0.54	-0.2
1,334,351	-		CCNA_01207	0.56	-1.5
1,334,454	+		CCNA_01207	0.64	+0.4
1,334,454	+		CCNA_01207	0.64	+0.8
1,334,462	-		CCNA_01207	0.65	-0.9
1,334,509	+		CCNA_01207	0.69	-0.4
1,334,530	-		CCNA_01207	0.71	-1.1
1,334,559	+		CCNA_01207	0.73	+0.0
1,334,565	-		CCNA_01207	0.74	-0.5
1,334,583	+		CCNA_01207	0.75	+0.1
1,334,590	+		CCNA_01207	0.76	-1.0
1,334,613	-		CCNA_01207	0.78	+1.8
1,334,624	+		CCNA_01207	0.79	-1.5
1,334,641	-		CCNA_01207	0.80	-0.6
1,334,675	-				+3.0
1,334,750	+		CCNA_01207	0.89	-0.3
1,334,753	-		CCNA_01207	0.90	-1.2
1,334,758	-				-1.0
1,334,800	+				+0.1
1,334,800	-				+1.8
1,334,830	+				+1.1
1,334,843	-				+1.5
1,334,843	-				-2.1
1,334,869	+				-1.1
1,334,869	+				-0.3
1,334,869	+				-0.6
1,334,869	+				-1.3
1,334,869	+				-1.1
1,334,877	-				-1.3
1,334,877	-				-1.7
1,334,896	+				+0.3
1,334,896	+				+1.6
1,334,904	-				-0.6
1,334,956	-		CCNA_01208	0.14	-1.3
1,334,964	-		CCNA_01208	0.15	+0.2
1,334,986	+		CCNA_01208	0.19	-1.5
1,334,987	+		CCNA_01208	0.19	-1.1
1,334,987	+		CCNA_01208	0.19	-0.9
1,334,995	-		CCNA_01208	0.20	-0.3
1,335,000	-		CCNA_01208	0.21	-0.2
1,335,041	+		CCNA_01208	0.28	-1.9
1,335,041	+		CCNA_01208	0.28	+0.0
1,335,056	+		CCNA_01208	0.30	+0.1
1,335,064	-		CCNA_01208	0.32	+0.3
1,335,064	-		CCNA_01208	0.32	-0.3
1,335,081	-		CCNA_01208	0.34	-0.2
1,335,083	-		CCNA_01208	0.35	-1.5
1,335,098	+		CCNA_01208	0.37	+0.7
1,335,103	-		CCNA_01208	0.38	+0.2
1,335,126	-		CCNA_01208	0.42	-2.5
1,335,126	-		CCNA_01208	0.42	-2.1
1,335,235	-		CCNA_01208	0.60	-1.3
1,335,253	+		CCNA_01208	0.63	-1.6
1,335,258	+		CCNA_01208	0.64	-0.1
1,335,268	+		CCNA_01208	0.65	-0.1
1,335,275	-		CCNA_01208	0.67	-2.1
1,335,361	+		CCNA_01208	0.81	-2.0
1,335,361	+		CCNA_01208	0.81	+0.5
1,335,369	-		CCNA_01208	0.82	-1.1
1,335,375	+		CCNA_01208	0.83	+1.1
1,335,399	+		CCNA_01208	0.87	-1.0
1,335,409	+		CCNA_01208	0.89	-1.5
1,335,472	+				-1.3
1,335,528	+				-0.0
1,335,551	-				-2.0
1,335,580	-				+0.9
1,335,590	-				-0.7
1,335,642	+		CCNA_01209	0.13	-2.3
1,335,647	-		CCNA_01209	0.14	-0.7
1,335,650	+		CCNA_01209	0.14	-0.2
1,335,693	+				+1.4
1,335,696	-		CCNA_01209	0.18	-0.4
1,335,730	+		CCNA_01209	0.21	+0.4
1,335,777	+		CCNA_01209	0.25	-0.3
1,335,777	+		CCNA_01209	0.25	+0.9
1,335,777	+		CCNA_01209	0.25	+1.3
1,335,777	+		CCNA_01209	0.25	+2.5
1,335,777	+		CCNA_01209	0.25	+0.2
1,335,777	+		CCNA_01209	0.25	-0.4
1,335,777	+		CCNA_01209	0.25	+0.1
1,335,777	+		CCNA_01209	0.25	-0.8
1,335,785	-		CCNA_01209	0.26	-2.0
1,335,785	-		CCNA_01209	0.26	-0.1
1,335,785	-		CCNA_01209	0.26	-0.6
1,335,785	-				+0.6
1,335,785	-		CCNA_01209	0.26	+0.2
1,335,785	-		CCNA_01209	0.26	-1.1
1,335,785	-		CCNA_01209	0.26	-1.7
1,335,785	-		CCNA_01209	0.26	-2.1
1,335,785	-		CCNA_01209	0.26	+0.7
1,335,785	-		CCNA_01209	0.26	-0.7
1,335,785	-		CCNA_01209	0.26	-1.9
1,335,785	-		CCNA_01209	0.26	-1.8
1,335,801	+		CCNA_01209	0.27	-2.4
1,335,816	-		CCNA_01209	0.29	+0.2
1,335,839	-		CCNA_01209	0.31	-1.6
1,335,853	-		CCNA_01209	0.32	+0.6
1,335,855	+		CCNA_01209	0.32	-2.1
1,335,923	-		CCNA_01209	0.38	+1.2
1,335,923	-		CCNA_01209	0.38	-0.1
1,335,923	-		CCNA_01209	0.38	-0.2
1,335,951	-		CCNA_01209	0.40	-1.4
1,335,991	+		CCNA_01209	0.44	+0.6
1,336,113	+		CCNA_01209	0.54	-0.4
1,336,114	+		CCNA_01209	0.54	-0.4
1,336,114	+		CCNA_01209	0.54	-0.0
1,336,114	+		CCNA_01209	0.54	-1.2
1,336,122	-		CCNA_01209	0.55	-0.9
1,336,122	-		CCNA_01209	0.55	+0.6
1,336,122	-		CCNA_01209	0.55	-1.8
1,336,122	-		CCNA_01209	0.55	-0.9
1,336,166	+		CCNA_01209	0.59	+0.3
1,336,260	+		CCNA_01209	0.67	+2.6
1,336,268	-		CCNA_01209	0.68	+1.8
1,336,268	-		CCNA_01209	0.68	+0.8
1,336,278	+		CCNA_01209	0.69	+1.0
1,336,281	-		CCNA_01209	0.69	+0.1
1,336,331	-		CCNA_01209	0.73	+1.2
1,336,333	+		CCNA_01209	0.73	-0.5
1,336,341	-		CCNA_01209	0.74	-1.6
1,336,346	-		CCNA_01209	0.75	-0.2
1,336,420	+		CCNA_01209	0.81	-1.7
1,336,420	+		CCNA_01209	0.81	+1.6
1,336,420	+		CCNA_01209	0.81	+0.3
1,336,420	+		CCNA_01209	0.81	+1.6
1,336,428	-		CCNA_01209	0.82	-0.9
1,336,428	-		CCNA_01209	0.82	+0.6
1,336,428	-		CCNA_01209	0.82	-0.7