Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00708

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00707 and CCNA_00708 overlap by 4 nucleotidesCCNA_00708 and CCNA_00709 are separated by 107 nucleotidesCCNA_00709 and CCNA_00710 are separated by 120 nucleotides CCNA_00707: CCNA_00707 - hypothetical protein, at 764,103 to 765,185 _00707 CCNA_00708: CCNA_00708 - cobaltochelatase cobT subunit, at 765,182 to 767,110 _00708 CCNA_00709: CCNA_00709 - hypothetical protein, at 767,218 to 767,400 _00709 CCNA_00710: CCNA_00710 - alpha/beta hydrolase family protein, at 767,521 to 768,690 _00710 Position (kb) 765 766 767 768Strain fitness (log2 ratio) -2 -1 0 1 2 3at 764.183 kb on - strandat 764.190 kb on - strandat 764.226 kb on + strand, within CCNA_00707at 764.247 kb on + strand, within CCNA_00707at 764.247 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.267 kb on + strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.274 kb on + strandat 764.275 kb on - strand, within CCNA_00707at 764.281 kb on + strand, within CCNA_00707at 764.281 kb on + strand, within CCNA_00707at 764.304 kb on - strand, within CCNA_00707at 764.351 kb on - strand, within CCNA_00707at 764.356 kb on - strand, within CCNA_00707at 764.396 kb on + strand, within CCNA_00707at 764.417 kb on - strand, within CCNA_00707at 764.456 kb on - strand, within CCNA_00707at 764.477 kb on - strand, within CCNA_00707at 764.494 kb on + strand, within CCNA_00707at 764.502 kb on - strand, within CCNA_00707at 764.502 kb on - strand, within CCNA_00707at 764.600 kb on - strand, within CCNA_00707at 764.600 kb on - strand, within CCNA_00707at 764.613 kb on - strandat 764.620 kb on + strand, within CCNA_00707at 764.628 kb on + strand, within CCNA_00707at 764.646 kb on - strand, within CCNA_00707at 764.717 kb on - strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.730 kb on - strand, within CCNA_00707at 764.755 kb on + strand, within CCNA_00707at 764.766 kb on + strand, within CCNA_00707at 764.868 kb on - strand, within CCNA_00707at 764.878 kb on - strand, within CCNA_00707at 764.883 kb on + strand, within CCNA_00707at 764.956 kb on - strand, within CCNA_00707at 764.958 kb on + strand, within CCNA_00707at 764.958 kb on + strand, within CCNA_00707at 764.966 kb on - strand, within CCNA_00707at 764.966 kb on - strand, within CCNA_00707at 764.966 kb on - strand, within CCNA_00707at 764.971 kb on - strand, within CCNA_00707at 764.971 kb on - strand, within CCNA_00707at 764.982 kb on + strand, within CCNA_00707at 764.994 kb on + strand, within CCNA_00707at 765.011 kb on - strand, within CCNA_00707at 765.011 kb on - strand, within CCNA_00707at 765.024 kb on + strand, within CCNA_00707at 765.028 kb on + strand, within CCNA_00707at 765.038 kb on + strand, within CCNA_00707at 765.069 kb on - strand, within CCNA_00707at 765.128 kb on - strandat 765.179 kb on - strandat 765.214 kb on + strandat 765.222 kb on - strandat 765.282 kb on - strandat 765.287 kb on - strandat 765.397 kb on + strand, within CCNA_00708at 765.460 kb on + strand, within CCNA_00708at 765.493 kb on - strand, within CCNA_00708at 765.569 kb on - strand, within CCNA_00708at 765.574 kb on - strand, within CCNA_00708at 765.574 kb on - strand, within CCNA_00708at 765.604 kb on - strand, within CCNA_00708at 765.617 kb on - strand, within CCNA_00708at 765.649 kb on - strand, within CCNA_00708at 765.778 kb on - strand, within CCNA_00708at 765.799 kb on + strand, within CCNA_00708at 765.819 kb on - strand, within CCNA_00708at 765.895 kb on - strand, within CCNA_00708at 765.921 kb on - strand, within CCNA_00708at 765.933 kb on - strand, within CCNA_00708at 765.988 kb on - strand, within CCNA_00708at 766.079 kb on - strand, within CCNA_00708at 766.079 kb on - strand, within CCNA_00708at 766.212 kb on + strand, within CCNA_00708at 766.260 kb on - strand, within CCNA_00708at 766.294 kb on - strand, within CCNA_00708at 766.404 kb on - strand, within CCNA_00708at 766.430 kb on - strand, within CCNA_00708at 766.491 kb on - strand, within CCNA_00708at 766.556 kb on + strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.580 kb on - strand, within CCNA_00708at 766.697 kb on - strand, within CCNA_00708at 766.718 kb on - strand, within CCNA_00708at 766.851 kb on - strand, within CCNA_00708at 766.873 kb on - strand, within CCNA_00708at 767.067 kb on - strandat 767.078 kb on - strandat 767.078 kb on - strandat 767.119 kb on + strandat 767.209 kb on - strandat 767.220 kb on + strandat 767.246 kb on + strand, within CCNA_00709at 767.264 kb on - strand, within CCNA_00709at 767.296 kb on + strand, within CCNA_00709at 767.322 kb on - strand, within CCNA_00709at 767.339 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.461 kb on - strandat 767.496 kb on - strandat 767.531 kb on + strandat 767.537 kb on + strandat 767.539 kb on - strandat 767.545 kb on - strandat 767.545 kb on - strandat 767.576 kb on - strandat 767.581 kb on - strandat 767.583 kb on + strandat 767.591 kb on - strandat 767.598 kb on + strandat 767.599 kb on + strandat 767.606 kb on + strandat 767.621 kb on - strandat 767.645 kb on + strand, within CCNA_00710at 767.650 kb on + strand, within CCNA_00710at 767.653 kb on - strand, within CCNA_00710at 767.658 kb on - strand, within CCNA_00710at 767.689 kb on - strand, within CCNA_00710at 767.697 kb on + strand, within CCNA_00710at 767.713 kb on + strand, within CCNA_00710at 767.716 kb on - strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.801 kb on - strand, within CCNA_00710at 767.838 kb on + strand, within CCNA_00710at 767.843 kb on + strand, within CCNA_00710at 767.851 kb on - strand, within CCNA_00710at 767.851 kb on - strand, within CCNA_00710at 767.869 kb on + strand, within CCNA_00710at 767.870 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.942 kb on - strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 768.001 kb on + strand, within CCNA_00710at 768.040 kb on - strand, within CCNA_00710at 768.083 kb on + strand, within CCNA_00710at 768.091 kb on - strand, within CCNA_00710at 768.101 kb on - strand, within CCNA_00710

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml
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764,183 - +0.9
764,190 - +1.1
764,226 + CCNA_00707 0.11 +1.9
764,247 + CCNA_00707 0.13 -0.4
764,247 + CCNA_00707 0.13 -0.3
764,262 + CCNA_00707 0.15 -1.4
764,262 + CCNA_00707 0.15 +1.1
764,262 + CCNA_00707 0.15 +1.4
764,262 + CCNA_00707 0.15 -0.0
764,262 + CCNA_00707 0.15 -1.8
764,262 + CCNA_00707 0.15 -0.3
764,262 + CCNA_00707 0.15 -0.3
764,267 + CCNA_00707 0.15 +0.1
764,270 - CCNA_00707 0.15 +1.7
764,270 - CCNA_00707 0.15 +0.0
764,270 - CCNA_00707 0.15 +1.5
764,270 - CCNA_00707 0.15 +0.9
764,270 - CCNA_00707 0.15 +1.1
764,274 + +2.1
764,275 - CCNA_00707 0.16 +0.9
764,281 + CCNA_00707 0.16 +0.5
764,281 + CCNA_00707 0.16 +0.6
764,304 - CCNA_00707 0.19 +1.6
764,351 - CCNA_00707 0.23 +1.1
764,356 - CCNA_00707 0.23 +0.4
764,396 + CCNA_00707 0.27 -2.2
764,417 - CCNA_00707 0.29 +1.6
764,456 - CCNA_00707 0.33 +2.1
764,477 - CCNA_00707 0.35 +1.4
764,494 + CCNA_00707 0.36 -0.5
764,502 - CCNA_00707 0.37 +0.8
764,502 - CCNA_00707 0.37 +1.4
764,600 - CCNA_00707 0.46 +1.1
764,600 - CCNA_00707 0.46 +0.6
764,613 - +3.3
764,620 + CCNA_00707 0.48 +0.1
764,628 + CCNA_00707 0.48 -0.4
764,646 - CCNA_00707 0.50 +1.3
764,717 - CCNA_00707 0.57 +0.4
764,722 + CCNA_00707 0.57 +0.0
764,722 + CCNA_00707 0.57 +0.3
764,722 + CCNA_00707 0.57 +0.1
764,722 + CCNA_00707 0.57 -2.3
764,730 - CCNA_00707 0.58 +0.9
764,755 + CCNA_00707 0.60 -1.5
764,766 + CCNA_00707 0.61 -0.1
764,868 - CCNA_00707 0.71 +1.3
764,878 - CCNA_00707 0.72 +1.3
764,883 + CCNA_00707 0.72 +0.5
764,956 - CCNA_00707 0.79 +1.9
764,958 + CCNA_00707 0.79 +1.6
764,958 + CCNA_00707 0.79 +0.1
764,966 - CCNA_00707 0.80 -0.0
764,966 - CCNA_00707 0.80 +1.8
764,966 - CCNA_00707 0.80 +1.2
764,971 - CCNA_00707 0.80 -0.0
764,971 - CCNA_00707 0.80 +1.1
764,982 + CCNA_00707 0.81 -0.5
764,994 + CCNA_00707 0.82 -1.2
765,011 - CCNA_00707 0.84 +1.1
765,011 - CCNA_00707 0.84 +0.8
765,024 + CCNA_00707 0.85 +0.2
765,028 + CCNA_00707 0.85 -0.9
765,038 + CCNA_00707 0.86 -0.4
765,069 - CCNA_00707 0.89 +0.8
765,128 - +0.7
765,179 - +1.2
765,214 + -2.0
765,222 - +1.4
765,282 - +1.0
765,287 - +1.0
765,397 + CCNA_00708 0.11 +1.1
765,460 + CCNA_00708 0.14 +0.8
765,493 - CCNA_00708 0.16 +1.0
765,569 - CCNA_00708 0.20 -0.5
765,574 - CCNA_00708 0.20 -0.1
765,574 - CCNA_00708 0.20 -0.7
765,604 - CCNA_00708 0.22 -0.1
765,617 - CCNA_00708 0.23 +0.3
765,649 - CCNA_00708 0.24 +1.3
765,778 - CCNA_00708 0.31 -1.8
765,799 + CCNA_00708 0.32 +1.4
765,819 - CCNA_00708 0.33 +0.8
765,895 - CCNA_00708 0.37 -0.2
765,921 - CCNA_00708 0.38 -0.7
765,933 - CCNA_00708 0.39 -0.7
765,988 - CCNA_00708 0.42 -0.7
766,079 - CCNA_00708 0.47 -1.9
766,079 - CCNA_00708 0.47 -2.3
766,212 + CCNA_00708 0.53 +0.9
766,260 - CCNA_00708 0.56 +0.4
766,294 - CCNA_00708 0.58 -0.5
766,404 - CCNA_00708 0.63 -0.2
766,430 - CCNA_00708 0.65 +0.5
766,491 - CCNA_00708 0.68 +0.4
766,556 + CCNA_00708 0.71 +0.9
766,564 - CCNA_00708 0.72 +0.4
766,564 - CCNA_00708 0.72 -1.8
766,564 - CCNA_00708 0.72 +0.1
766,564 - CCNA_00708 0.72 -1.2
766,580 - CCNA_00708 0.72 +0.1
766,697 - CCNA_00708 0.79 -0.9
766,718 - CCNA_00708 0.80 -0.1
766,851 - CCNA_00708 0.87 -1.3
766,873 - CCNA_00708 0.88 -1.2
767,067 - -1.7
767,078 - +0.6
767,078 - +1.1
767,119 + -0.4
767,209 - +1.0
767,220 + -0.5
767,246 + CCNA_00709 0.15 -0.9
767,264 - CCNA_00709 0.25 -0.5
767,296 + CCNA_00709 0.43 -0.3
767,322 - CCNA_00709 0.57 -0.9
767,339 + CCNA_00709 0.66 +1.1
767,371 + CCNA_00709 0.84 -0.6
767,371 + CCNA_00709 0.84 +1.1
767,371 + CCNA_00709 0.84 +0.2
767,371 + CCNA_00709 0.84 +1.1
767,373 + CCNA_00709 0.85 +0.7
767,373 + CCNA_00709 0.85 -0.5
767,373 + CCNA_00709 0.85 +0.9
767,373 + CCNA_00709 0.85 +1.6
767,373 + CCNA_00709 0.85 +2.1
767,373 + CCNA_00709 0.85 +0.3
767,373 + CCNA_00709 0.85 +0.6
767,373 + CCNA_00709 0.85 +0.5
767,373 + CCNA_00709 0.85 +1.7
767,373 + CCNA_00709 0.85 +0.3
767,379 - CCNA_00709 0.88 +0.4
767,379 - CCNA_00709 0.88 +0.0
767,381 - CCNA_00709 0.89 +0.4
767,461 - -0.7
767,496 - +2.0
767,531 + +0.7
767,537 + +1.1
767,539 - +0.4
767,545 - -0.6
767,545 - -0.1
767,576 - +0.3
767,581 - +0.2
767,583 + +0.4
767,591 - -1.2
767,598 + -0.1
767,599 + -2.3
767,606 + +0.4
767,621 - +0.6
767,645 + CCNA_00710 0.11 +0.4
767,650 + CCNA_00710 0.11 +0.8
767,653 - CCNA_00710 0.11 -1.4
767,658 - CCNA_00710 0.12 -0.1
767,689 - CCNA_00710 0.14 -0.8
767,697 + CCNA_00710 0.15 +2.1
767,713 + CCNA_00710 0.16 -0.3
767,716 - CCNA_00710 0.17 +0.9
767,773 + CCNA_00710 0.22 -1.1
767,773 + CCNA_00710 0.22 -0.5
767,801 - CCNA_00710 0.24 -2.0
767,838 + CCNA_00710 0.27 -0.6
767,843 + CCNA_00710 0.28 -0.0
767,851 - CCNA_00710 0.28 +0.3
767,851 - CCNA_00710 0.28 -0.6
767,869 + CCNA_00710 0.30 -2.1
767,870 - CCNA_00710 0.30 -0.4
767,872 - CCNA_00710 0.30 +0.2
767,872 - CCNA_00710 0.30 +0.4
767,872 - CCNA_00710 0.30 -0.3
767,942 - CCNA_00710 0.36 +0.1
767,979 + CCNA_00710 0.39 +1.2
767,979 + CCNA_00710 0.39 -0.8
767,979 + CCNA_00710 0.39 +0.5
767,979 + CCNA_00710 0.39 -0.5
767,979 + CCNA_00710 0.39 -1.0
767,979 + CCNA_00710 0.39 -0.7
767,979 + CCNA_00710 0.39 +0.0
767,987 - CCNA_00710 0.40 -0.7
767,987 - CCNA_00710 0.40 -0.6
767,987 - CCNA_00710 0.40 +0.6
767,987 - CCNA_00710 0.40 -1.4
767,987 - CCNA_00710 0.40 +0.3
767,987 - CCNA_00710 0.40 +0.5
768,001 + CCNA_00710 0.41 +0.7
768,040 - CCNA_00710 0.44 -0.1
768,083 + CCNA_00710 0.48 -0.8
768,091 - CCNA_00710 0.49 +0.1
768,101 - CCNA_00710 0.50 -0.5

Or see this region's nucleotide sequence