Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00281

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00279 and CCNA_00280 overlap by 4 nucleotidesCCNA_00280 and CCNA_00281 overlap by 1 nucleotidesCCNA_00281 and CCNA_00282 are separated by 91 nucleotidesCCNA_00282 and CCNA_00283 are separated by 117 nucleotides CCNA_00279: CCNA_00279 - NAD(P)H-quinone reductase, at 292,311 to 292,901 _00279 CCNA_00280: CCNA_00280 - tRNA pseudouridine synthase A, at 292,898 to 293,641 _00280 CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567 _00281 CCNA_00282: CCNA_00282 - conserved cell surface protein, at 294,659 to 294,991 _00282 CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969 _00283 Position (kb) 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 292.698 kb on + strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.703 kb on + strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.761 kb on + strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.816 kb on - strand, within CCNA_00279at 292.827 kb on + strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.879 kb on + strandat 292.879 kb on + strandat 292.900 kb on + strandat 292.986 kb on + strand, within CCNA_00280at 292.987 kb on + strand, within CCNA_00280at 292.994 kb on - strand, within CCNA_00280at 292.994 kb on - strand, within CCNA_00280at 293.002 kb on - strand, within CCNA_00280at 293.004 kb on + strand, within CCNA_00280at 293.004 kb on + strand, within CCNA_00280at 293.022 kb on + strand, within CCNA_00280at 293.022 kb on + strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.051 kb on + strand, within CCNA_00280at 293.051 kb on + strand, within CCNA_00280at 293.077 kb on - strand, within CCNA_00280at 293.125 kb on + strand, within CCNA_00280at 293.128 kb on - strand, within CCNA_00280at 293.167 kb on - strand, within CCNA_00280at 293.191 kb on + strand, within CCNA_00280at 293.214 kb on - strand, within CCNA_00280at 293.229 kb on + strand, within CCNA_00280at 293.243 kb on - strand, within CCNA_00280at 293.262 kb on + strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.299 kb on - strand, within CCNA_00280at 293.299 kb on - strand, within CCNA_00280at 293.315 kb on - strand, within CCNA_00280at 293.320 kb on - strand, within CCNA_00280at 293.333 kb on - strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.348 kb on - strand, within CCNA_00280at 293.348 kb on - strandat 293.348 kb on - strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.398 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.417 kb on - strand, within CCNA_00280at 293.436 kb on + strand, within CCNA_00280at 293.438 kb on - strand, within CCNA_00280at 293.471 kb on + strand, within CCNA_00280at 293.532 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.591 kb on - strandat 293.601 kb on - strandat 293.601 kb on - strandat 293.634 kb on - strandat 293.644 kb on + strandat 293.652 kb on - strandat 293.660 kb on - strandat 293.662 kb on - strandat 293.804 kb on + strand, within CCNA_00281at 293.961 kb on + strand, within CCNA_00281at 294.289 kb on + strand, within CCNA_00281at 294.419 kb on + strand, within CCNA_00281at 294.609 kb on + strandat 294.609 kb on + strandat 294.617 kb on - strandat 294.632 kb on + strandat 294.632 kb on + strandat 294.640 kb on - strandat 294.640 kb on - strandat 294.650 kb on + strandat 294.655 kb on + strandat 294.663 kb on - strandat 294.663 kb on - strandat 294.677 kb on - strandat 294.745 kb on + strand, within CCNA_00282at 294.745 kb on + strand, within CCNA_00282at 294.746 kb on + strand, within CCNA_00282at 294.791 kb on + strand, within CCNA_00282at 294.799 kb on - strand, within CCNA_00282at 294.849 kb on + strand, within CCNA_00282at 294.869 kb on + strand, within CCNA_00282at 294.877 kb on - strand, within CCNA_00282at 294.877 kb on - strand, within CCNA_00282at 294.912 kb on - strand, within CCNA_00282at 294.912 kb on - strand, within CCNA_00282at 294.912 kb on - strand, within CCNA_00282at 294.994 kb on - strandat 294.995 kb on - strandat 295.041 kb on - strandat 295.050 kb on - strandat 295.078 kb on + strandat 295.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml
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292,698 + CCNA_00279 0.65 -0.7
292,698 + CCNA_00279 0.65 -1.2
292,703 + CCNA_00279 0.66 +0.5
292,706 - CCNA_00279 0.67 -0.7
292,706 - CCNA_00279 0.67 -0.5
292,706 - CCNA_00279 0.67 -1.9
292,710 + CCNA_00279 0.68 -0.7
292,710 + CCNA_00279 0.68 +0.3
292,710 + CCNA_00279 0.68 +1.4
292,718 - CCNA_00279 0.69 -0.0
292,718 - CCNA_00279 0.69 -0.9
292,761 + CCNA_00279 0.76 +0.8
292,785 - CCNA_00279 0.80 +0.8
292,785 - CCNA_00279 0.80 -0.4
292,816 - CCNA_00279 0.85 -0.2
292,827 + CCNA_00279 0.87 -0.1
292,833 - CCNA_00279 0.88 -1.2
292,833 - CCNA_00279 0.88 -1.0
292,879 + -1.2
292,879 + +0.4
292,900 + -0.0
292,986 + CCNA_00280 0.12 -1.2
292,987 + CCNA_00280 0.12 +0.4
292,994 - CCNA_00280 0.13 -1.0
292,994 - CCNA_00280 0.13 -0.4
293,002 - CCNA_00280 0.14 +0.1
293,004 + CCNA_00280 0.14 -0.2
293,004 + CCNA_00280 0.14 +0.1
293,022 + CCNA_00280 0.17 +2.3
293,022 + CCNA_00280 0.17 -1.6
293,030 - CCNA_00280 0.18 -0.7
293,030 - CCNA_00280 0.18 +0.3
293,051 + CCNA_00280 0.21 -0.5
293,051 + CCNA_00280 0.21 -1.3
293,077 - CCNA_00280 0.24 -1.0
293,125 + CCNA_00280 0.31 -0.1
293,128 - CCNA_00280 0.31 -1.0
293,167 - CCNA_00280 0.36 +0.1
293,191 + CCNA_00280 0.39 -0.4
293,214 - CCNA_00280 0.42 -1.0
293,229 + CCNA_00280 0.44 -0.5
293,243 - CCNA_00280 0.46 -2.0
293,262 + CCNA_00280 0.49 -0.6
293,275 - CCNA_00280 0.51 -0.2
293,275 - CCNA_00280 0.51 -0.4
293,275 - CCNA_00280 0.51 -0.4
293,299 - CCNA_00280 0.54 -0.2
293,299 - CCNA_00280 0.54 -0.0
293,315 - CCNA_00280 0.56 -0.9
293,320 - CCNA_00280 0.57 -0.9
293,333 - CCNA_00280 0.58 -1.0
293,340 + CCNA_00280 0.59 -1.2
293,348 - CCNA_00280 0.60 -0.4
293,348 - +3.7
293,348 - CCNA_00280 0.60 -1.2
293,390 + CCNA_00280 0.66 -1.6
293,390 + CCNA_00280 0.66 -1.3
293,398 - CCNA_00280 0.67 -0.3
293,403 - CCNA_00280 0.68 -0.4
293,403 - CCNA_00280 0.68 -1.8
293,417 - CCNA_00280 0.70 -1.8
293,436 + CCNA_00280 0.72 -0.4
293,438 - CCNA_00280 0.73 -0.4
293,471 + CCNA_00280 0.77 -1.1
293,532 + +0.1
293,567 + -1.2
293,567 + -2.4
293,591 - -0.4
293,601 - -0.3
293,601 - -0.1
293,634 - -0.4
293,644 + -0.6
293,652 - +0.5
293,660 - +0.8
293,662 - +0.9
293,804 + CCNA_00281 0.18 -0.2
293,961 + CCNA_00281 0.35 +0.1
294,289 + CCNA_00281 0.70 -1.0
294,419 + CCNA_00281 0.84 -0.2
294,609 + -0.2
294,609 + -1.2
294,617 - -1.2
294,632 + +0.3
294,632 + -0.2
294,640 - +0.1
294,640 - -0.3
294,650 + +0.1
294,655 + -0.7
294,663 - +0.0
294,663 - +0.5
294,677 - -2.3
294,745 + CCNA_00282 0.26 -1.3
294,745 + CCNA_00282 0.26 -0.5
294,746 + CCNA_00282 0.26 -0.5
294,791 + CCNA_00282 0.40 +0.2
294,799 - CCNA_00282 0.42 -0.0
294,849 + CCNA_00282 0.57 +0.5
294,869 + CCNA_00282 0.63 +1.0
294,877 - CCNA_00282 0.65 -0.5
294,877 - CCNA_00282 0.65 +1.0
294,912 - CCNA_00282 0.76 +0.3
294,912 - CCNA_00282 0.76 +0.7
294,912 - CCNA_00282 0.76 +1.1
294,994 - -0.4
294,995 - -0.1
295,041 - +1.0
295,050 - +1.1
295,078 + -1.5
295,107 + +0.2

Or see this region's nucleotide sequence