Experiment: PYE with Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00130 and CCNA_00131 are separated by 200 nucleotides CCNA_00131 and CCNA_00132 are separated by 91 nucleotides
CCNA_00130: CCNA_00130 - Kup system potassium uptake protein, at 138,921 to 140,918
_00130
CCNA_00131: CCNA_00131 - Rrf2 family protein, at 141,119 to 141,541
_00131
CCNA_00132: CCNA_00132 - ketoacyl reductase hetN, at 141,633 to 142,433
_00132
Position (kb) 141
142 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 141.004 kb on + strand at 141.048 kb on + strand at 141.157 kb on - strand at 141.192 kb on - strand, within CCNA_00131 at 141.210 kb on + strand, within CCNA_00131 at 141.210 kb on + strand, within CCNA_00131 at 141.259 kb on + strand, within CCNA_00131 at 141.259 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.267 kb on - strand, within CCNA_00131 at 141.272 kb on - strand, within CCNA_00131 at 141.274 kb on + strand, within CCNA_00131 at 141.274 kb on + strand, within CCNA_00131 at 141.279 kb on + strand, within CCNA_00131 at 141.292 kb on - strand, within CCNA_00131 at 141.292 kb on - strand, within CCNA_00131 at 141.318 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.345 kb on + strand, within CCNA_00131 at 141.370 kb on - strand, within CCNA_00131 at 141.370 kb on - strand, within CCNA_00131 at 141.372 kb on - strand, within CCNA_00131 at 141.381 kb on + strand, within CCNA_00131 at 141.401 kb on + strand, within CCNA_00131 at 141.409 kb on + strand, within CCNA_00131 at 141.466 kb on + strand, within CCNA_00131 at 141.474 kb on - strand, within CCNA_00131 at 141.505 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.539 kb on - strand at 141.539 kb on - strand at 141.539 kb on - strand at 141.553 kb on + strand at 141.570 kb on + strand at 141.577 kb on + strand at 141.643 kb on + strand at 141.659 kb on - strand at 141.661 kb on - strand at 141.695 kb on + strand at 141.700 kb on + strand at 141.710 kb on + strand at 141.722 kb on + strand, within CCNA_00132 at 141.722 kb on + strand, within CCNA_00132 at 141.769 kb on + strand, within CCNA_00132 at 141.794 kb on + strand, within CCNA_00132 at 141.808 kb on + strand, within CCNA_00132 at 141.816 kb on - strand, within CCNA_00132 at 141.851 kb on - strand, within CCNA_00132 at 141.875 kb on + strand, within CCNA_00132 at 141.890 kb on - strand, within CCNA_00132 at 141.895 kb on - strand, within CCNA_00132 at 141.909 kb on - strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.912 kb on + strand, within CCNA_00132 at 141.919 kb on - strand, within CCNA_00132 at 141.919 kb on - strand, within CCNA_00132 at 141.920 kb on - strand, within CCNA_00132 at 141.920 kb on - strand, within CCNA_00132 at 141.947 kb on + strand, within CCNA_00132 at 141.947 kb on + strand, within CCNA_00132 at 141.955 kb on - strand, within CCNA_00132 at 141.955 kb on - strand, within CCNA_00132 at 141.966 kb on + strand, within CCNA_00132 at 141.966 kb on + strand, within CCNA_00132 at 141.999 kb on + strand, within CCNA_00132 at 142.013 kb on + strand, within CCNA_00132 at 142.015 kb on - strand, within CCNA_00132 at 142.024 kb on + strand, within CCNA_00132 at 142.027 kb on - strand, within CCNA_00132 at 142.068 kb on - strand, within CCNA_00132 at 142.087 kb on + strand, within CCNA_00132 at 142.095 kb on - strand, within CCNA_00132 at 142.101 kb on + strand, within CCNA_00132 at 142.109 kb on - strand, within CCNA_00132 at 142.126 kb on + strand, within CCNA_00132 at 142.132 kb on - strand, within CCNA_00132 at 142.180 kb on + strand, within CCNA_00132 at 142.183 kb on - strand, within CCNA_00132 at 142.185 kb on + strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.245 kb on - strand, within CCNA_00132 at 142.340 kb on + strand, within CCNA_00132 at 142.340 kb on + strand, within CCNA_00132 at 142.379 kb on + strand at 142.386 kb on + strand at 142.428 kb on + strand at 142.436 kb on - strand at 142.436 kb on - strand at 142.436 kb on - strand at 142.436 kb on - strand at 142.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml remove 141,004 + -2.3 141,048 + +0.2 141,157 - -1.2 141,192 - CCNA_00131 0.17 -2.1 141,210 + CCNA_00131 0.22 -2.0 141,210 + CCNA_00131 0.22 +0.4 141,259 + CCNA_00131 0.33 -0.7 141,259 + CCNA_00131 0.33 -1.2 141,264 + CCNA_00131 0.34 +0.3 141,264 + CCNA_00131 0.34 -0.6 141,264 + CCNA_00131 0.34 -1.1 141,267 - CCNA_00131 0.35 +0.5 141,272 - CCNA_00131 0.36 +1.0 141,274 + CCNA_00131 0.37 -1.5 141,274 + CCNA_00131 0.37 -3.9 141,279 + CCNA_00131 0.38 -0.8 141,292 - CCNA_00131 0.41 -0.9 141,292 - CCNA_00131 0.41 -0.4 141,318 + CCNA_00131 0.47 +0.5 141,328 + CCNA_00131 0.49 +0.0 141,328 + CCNA_00131 0.49 -0.7 141,328 + CCNA_00131 0.49 -1.4 141,345 + CCNA_00131 0.53 -0.9 141,370 - CCNA_00131 0.59 -1.8 141,370 - CCNA_00131 0.59 -2.3 141,372 - CCNA_00131 0.60 -3.0 141,381 + CCNA_00131 0.62 -1.8 141,401 + CCNA_00131 0.67 -2.1 141,409 + CCNA_00131 0.69 -2.6 141,466 + CCNA_00131 0.82 -2.3 141,474 - CCNA_00131 0.84 -0.9 141,505 + -1.5 141,531 + -0.0 141,531 + -0.4 141,531 + +0.5 141,531 + +0.3 141,531 + +0.9 141,539 - -1.0 141,539 - -2.1 141,539 - -0.1 141,553 + +1.8 141,570 + +1.8 141,577 + +0.9 141,643 + -0.2 141,659 - +1.1 141,661 - -0.4 141,695 + -0.8 141,700 + +0.9 141,710 + +1.3 141,722 + CCNA_00132 0.11 +1.9 141,722 + CCNA_00132 0.11 +0.2 141,769 + CCNA_00132 0.17 +2.9 141,794 + CCNA_00132 0.20 +0.7 141,808 + CCNA_00132 0.22 +0.6 141,816 - CCNA_00132 0.23 +0.3 141,851 - CCNA_00132 0.27 -0.8 141,875 + CCNA_00132 0.30 -0.3 141,890 - CCNA_00132 0.32 +0.6 141,895 - CCNA_00132 0.33 +0.6 141,909 - CCNA_00132 0.34 +0.9 141,911 + CCNA_00132 0.35 -1.4 141,911 + CCNA_00132 0.35 +0.3 141,911 + CCNA_00132 0.35 -0.8 141,912 + CCNA_00132 0.35 +0.2 141,919 - CCNA_00132 0.36 -1.0 141,919 - CCNA_00132 0.36 +0.5 141,920 - CCNA_00132 0.36 -0.6 141,920 - CCNA_00132 0.36 -0.6 141,947 + CCNA_00132 0.39 +1.4 141,947 + CCNA_00132 0.39 +1.3 141,955 - CCNA_00132 0.40 +0.5 141,955 - CCNA_00132 0.40 -0.7 141,966 + CCNA_00132 0.42 -1.0 141,966 + CCNA_00132 0.42 -1.5 141,999 + CCNA_00132 0.46 -0.9 142,013 + CCNA_00132 0.47 -0.4 142,015 - CCNA_00132 0.48 -0.8 142,024 + CCNA_00132 0.49 -1.8 142,027 - CCNA_00132 0.49 -1.7 142,068 - CCNA_00132 0.54 +0.0 142,087 + CCNA_00132 0.57 +2.3 142,095 - CCNA_00132 0.58 +0.7 142,101 + CCNA_00132 0.58 -1.5 142,109 - CCNA_00132 0.59 +0.6 142,126 + CCNA_00132 0.62 -0.4 142,132 - CCNA_00132 0.62 -0.2 142,180 + CCNA_00132 0.68 +0.6 142,183 - CCNA_00132 0.69 -0.6 142,185 + CCNA_00132 0.69 -0.1 142,193 - CCNA_00132 0.70 -1.1 142,193 - CCNA_00132 0.70 +1.0 142,193 - CCNA_00132 0.70 +0.1 142,193 - CCNA_00132 0.70 -0.2 142,245 - CCNA_00132 0.76 +0.5 142,340 + CCNA_00132 0.88 -0.1 142,340 + CCNA_00132 0.88 +0.7 142,379 + +0.5 142,386 + +0.9 142,428 + +0.7 142,436 - +1.1 142,436 - -0.4 142,436 - +0.8 142,436 - +0.5 142,522 - -1.1
Or see this region's nucleotide sequence