Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_930

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_929 and Ac3H11_930 are separated by 8 nucleotidesAc3H11_930 and Ac3H11_931 are separated by 321 nucleotides Ac3H11_929 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 43,184 to 44,584 _929 Ac3H11_930 - hypothetical protein, at 44,593 to 45,345 _930 Ac3H11_931 - Phytoene synthase (EC 2.5.1.32), at 45,667 to 46,611 _931 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.653 kb on + strand, within Ac3H11_929at 43.653 kb on + strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.749 kb on + strand, within Ac3H11_929at 43.750 kb on - strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.152 kb on - strand, within Ac3H11_929at 44.152 kb on - strand, within Ac3H11_929at 44.152 kb on - strand, within Ac3H11_929at 44.154 kb on + strand, within Ac3H11_929at 44.154 kb on + strand, within Ac3H11_929at 44.154 kb on + strand, within Ac3H11_929at 44.155 kb on - strand, within Ac3H11_929at 44.441 kb on + strand, within Ac3H11_929at 44.441 kb on + strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.647 kb on - strandat 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.775 kb on - strand, within Ac3H11_930at 44.775 kb on - strand, within Ac3H11_930at 44.977 kb on + strand, within Ac3H11_930at 45.071 kb on + strand, within Ac3H11_930at 45.071 kb on + strand, within Ac3H11_930at 45.132 kb on - strand, within Ac3H11_930at 45.373 kb on + strandat 45.374 kb on - strandat 45.421 kb on + strandat 45.421 kb on + strandat 45.422 kb on - strandat 45.457 kb on + strandat 45.458 kb on - strandat 45.458 kb on - strandat 45.467 kb on + strandat 45.489 kb on - strandat 45.668 kb on + strandat 45.668 kb on + strandat 45.668 kb on + strandat 45.668 kb on + strandat 45.669 kb on - strandat 45.669 kb on - strandat 45.669 kb on - strandat 45.669 kb on - strandat 45.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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43,650 + Ac3H11_929 0.33 +0.2
43,650 + Ac3H11_929 0.33 +1.3
43,650 + Ac3H11_929 0.33 +0.5
43,650 + Ac3H11_929 0.33 +0.2
43,650 + Ac3H11_929 0.33 +0.5
43,650 + Ac3H11_929 0.33 +0.7
43,650 + Ac3H11_929 0.33 +1.4
43,651 - Ac3H11_929 0.33 -0.8
43,651 - Ac3H11_929 0.33 -0.1
43,651 - Ac3H11_929 0.33 -0.2
43,651 - Ac3H11_929 0.33 -1.1
43,653 + Ac3H11_929 0.33 +0.4
43,653 + Ac3H11_929 0.33 +0.4
43,654 - Ac3H11_929 0.34 +0.2
43,654 - Ac3H11_929 0.34 +0.6
43,654 - Ac3H11_929 0.34 +1.5
43,654 - Ac3H11_929 0.34 -0.1
43,654 - Ac3H11_929 0.34 -1.4
43,749 + Ac3H11_929 0.40 +0.2
43,750 - Ac3H11_929 0.40 -0.4
44,151 + Ac3H11_929 0.69 +1.1
44,151 + Ac3H11_929 0.69 +0.2
44,151 + Ac3H11_929 0.69 -0.2
44,151 + Ac3H11_929 0.69 +1.5
44,152 - Ac3H11_929 0.69 -0.2
44,152 - Ac3H11_929 0.69 -0.1
44,152 - Ac3H11_929 0.69 -0.2
44,154 + Ac3H11_929 0.69 +0.3
44,154 + Ac3H11_929 0.69 -0.9
44,154 + Ac3H11_929 0.69 -0.5
44,155 - Ac3H11_929 0.69 +1.3
44,441 + Ac3H11_929 0.90 +0.2
44,441 + Ac3H11_929 0.90 +0.2
44,442 - Ac3H11_929 0.90 +0.4
44,442 - Ac3H11_929 0.90 +1.1
44,442 - Ac3H11_929 0.90 -0.3
44,442 - Ac3H11_929 0.90 -0.9
44,647 - +0.1
44,675 + Ac3H11_930 0.11 +1.0
44,675 + Ac3H11_930 0.11 -0.6
44,675 + Ac3H11_930 0.11 +0.9
44,675 + Ac3H11_930 0.11 +0.0
44,675 + Ac3H11_930 0.11 -0.0
44,675 + Ac3H11_930 0.11 -2.3
44,675 + Ac3H11_930 0.11 -1.2
44,675 + Ac3H11_930 0.11 +1.0
44,676 - Ac3H11_930 0.11 +0.6
44,676 - Ac3H11_930 0.11 +0.5
44,676 - Ac3H11_930 0.11 +1.3
44,676 - Ac3H11_930 0.11 -0.6
44,774 + Ac3H11_930 0.24 -0.5
44,774 + Ac3H11_930 0.24 +0.2
44,774 + Ac3H11_930 0.24 +0.6
44,775 - Ac3H11_930 0.24 -0.7
44,775 - Ac3H11_930 0.24 -0.0
44,977 + Ac3H11_930 0.51 +0.4
45,071 + Ac3H11_930 0.63 +0.4
45,071 + Ac3H11_930 0.63 +0.0
45,132 - Ac3H11_930 0.72 +0.0
45,373 + -0.4
45,374 - +0.3
45,421 + +0.7
45,421 + -0.6
45,422 - +0.4
45,457 + -0.2
45,458 - -0.2
45,458 - +0.0
45,467 + -0.3
45,489 - -0.0
45,668 + -0.3
45,668 + -0.7
45,668 + -0.5
45,668 + +4.5
45,669 - -0.8
45,669 - -0.9
45,669 - +0.8
45,669 - -0.1
45,669 - -0.1

Or see this region's nucleotide sequence