Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4575

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4573 and Ac3H11_4574 are separated by 100 nucleotidesAc3H11_4574 and Ac3H11_4575 are separated by 5 nucleotidesAc3H11_4575 and Ac3H11_4576 are separated by 433 nucleotidesAc3H11_4576 and Ac3H11_4577 are separated by 221 nucleotides Ac3H11_4573 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 169,634 to 172,930 _4573 Ac3H11_4574 - hypothetical protein, at 173,031 to 173,426 _4574 Ac3H11_4575 - Permease of the drug/metabolite transporter (DMT) superfamily, at 173,432 to 174,628 _4575 Ac3H11_4576 - hypothetical protein, at 175,062 to 175,379 _4576 Ac3H11_4577 - Superoxide dismutase SodM-like protein ChrF, at 175,601 to 175,915 _4577 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1at 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.750 kb on + strandat 172.912 kb on - strandat 172.912 kb on - strandat 172.912 kb on - strandat 172.947 kb on - strandat 172.947 kb on - strandat 172.947 kb on - strandat 172.947 kb on - strandat 172.968 kb on - strandat 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.408 kb on - strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.425 kb on - strandat 173.425 kb on - strandat 173.425 kb on - strandat 173.573 kb on + strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.688 kb on + strand, within Ac3H11_4575at 173.688 kb on + strand, within Ac3H11_4575at 173.688 kb on + strand, within Ac3H11_4575at 173.689 kb on - strand, within Ac3H11_4575at 173.689 kb on - strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.797 kb on + strand, within Ac3H11_4575at 173.994 kb on + strand, within Ac3H11_4575at 173.994 kb on + strand, within Ac3H11_4575at 174.082 kb on - strand, within Ac3H11_4575at 174.082 kb on - strand, within Ac3H11_4575at 174.082 kb on - strand, within Ac3H11_4575at 174.514 kb on + strandat 174.514 kb on + strandat 174.515 kb on - strandat 174.515 kb on - strandat 174.515 kb on - strandat 174.515 kb on - strandat 174.551 kb on - strandat 174.743 kb on + strandat 174.744 kb on - strandat 174.744 kb on - strandat 174.965 kb on + strandat 174.965 kb on + strandat 174.965 kb on + strandat 174.965 kb on + strandat 174.966 kb on - strandat 174.966 kb on - strandat 174.999 kb on + strandat 174.999 kb on + strandat 175.044 kb on - strandat 175.097 kb on - strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strandat 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.424 kb on + strandat 175.424 kb on + strandat 175.425 kb on - strandat 175.425 kb on - strandat 175.425 kb on - strandat 175.445 kb on + strandat 175.446 kb on - strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.497 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.508 kb on - strandat 175.508 kb on - strandat 175.508 kb on - strandat 175.508 kb on - strandat 175.530 kb on + strandat 175.531 kb on - strandat 175.531 kb on - strandat 175.550 kb on + strandat 175.550 kb on + strandat 175.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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172,601 + +0.8
172,601 + -0.0
172,601 + +0.2
172,601 + +0.4
172,601 + -0.3
172,601 + -0.8
172,750 + +0.5
172,912 - +0.7
172,912 - -0.5
172,912 - +1.1
172,947 - -0.8
172,947 - +0.6
172,947 - -2.6
172,947 - -1.2
172,968 - +0.7
173,212 - Ac3H11_4574 0.46 +0.3
173,212 - Ac3H11_4574 0.46 +0.5
173,212 - Ac3H11_4574 0.46 +0.1
173,212 - Ac3H11_4574 0.46 -0.1
173,212 - Ac3H11_4574 0.46 +0.2
173,212 - Ac3H11_4574 0.46 +0.4
173,408 - -0.7
173,424 + +0.1
173,424 + +0.4
173,424 + +0.0
173,424 + +0.7
173,424 + -0.1
173,424 + +0.6
173,425 - +0.3
173,425 - -1.0
173,425 - -0.1
173,573 + Ac3H11_4575 0.12 -0.2
173,574 - Ac3H11_4575 0.12 -0.5
173,574 - Ac3H11_4575 0.12 -0.2
173,574 - Ac3H11_4575 0.12 -1.1
173,574 - Ac3H11_4575 0.12 -0.7
173,574 - Ac3H11_4575 0.12 +0.2
173,688 + Ac3H11_4575 0.21 +1.1
173,688 + Ac3H11_4575 0.21 -0.2
173,688 + Ac3H11_4575 0.21 -1.0
173,689 - Ac3H11_4575 0.21 +0.7
173,689 - Ac3H11_4575 0.21 +1.0
173,795 + Ac3H11_4575 0.30 -0.5
173,795 + Ac3H11_4575 0.30 -0.1
173,795 + Ac3H11_4575 0.30 -0.5
173,795 + Ac3H11_4575 0.30 -0.4
173,795 + Ac3H11_4575 0.30 -0.0
173,796 - Ac3H11_4575 0.30 -1.2
173,796 - Ac3H11_4575 0.30 -0.3
173,796 - Ac3H11_4575 0.30 -0.0
173,796 - Ac3H11_4575 0.30 -0.9
173,796 - Ac3H11_4575 0.30 -1.2
173,796 - Ac3H11_4575 0.30 -0.1
173,796 - Ac3H11_4575 0.30 -0.4
173,796 - Ac3H11_4575 0.30 -0.3
173,796 - Ac3H11_4575 0.30 -1.0
173,796 - Ac3H11_4575 0.30 +0.5
173,796 - Ac3H11_4575 0.30 -0.2
173,797 + Ac3H11_4575 0.30 -0.4
173,994 + Ac3H11_4575 0.47 +1.3
173,994 + Ac3H11_4575 0.47 +0.1
174,082 - Ac3H11_4575 0.54 -2.1
174,082 - Ac3H11_4575 0.54 -1.7
174,082 - Ac3H11_4575 0.54 -0.0
174,514 + +1.2
174,514 + -0.1
174,515 - -1.6
174,515 - -0.1
174,515 - +1.3
174,515 - +0.3
174,551 - +1.0
174,743 + -0.1
174,744 - -0.4
174,744 - -0.9
174,965 + -1.1
174,965 + +0.2
174,965 + -1.0
174,965 + -0.3
174,966 - -1.2
174,966 - +0.4
174,999 + +0.4
174,999 + -0.9
175,044 - +0.9
175,097 - Ac3H11_4576 0.11 +0.9
175,276 + Ac3H11_4576 0.67 +0.6
175,276 + Ac3H11_4576 0.67 -0.8
175,276 + Ac3H11_4576 0.67 -1.6
175,276 + Ac3H11_4576 0.67 +0.7
175,276 + Ac3H11_4576 0.67 +0.2
175,276 + Ac3H11_4576 0.67 +0.5
175,276 + Ac3H11_4576 0.67 +0.4
175,277 - Ac3H11_4576 0.68 -0.7
175,277 - Ac3H11_4576 0.68 -0.3
175,277 - Ac3H11_4576 0.68 -2.3
175,277 - +1.7
175,277 - Ac3H11_4576 0.68 -0.1
175,277 - Ac3H11_4576 0.68 +0.5
175,424 + -0.6
175,424 + -0.6
175,425 - -0.1
175,425 - -0.3
175,425 - +0.0
175,445 + +1.1
175,446 - -0.8
175,469 - +0.5
175,469 - +0.2
175,497 + +0.1
175,507 + +0.1
175,507 + +1.0
175,507 + +0.7
175,507 + +0.4
175,507 + +0.1
175,507 + +0.1
175,508 - -0.7
175,508 - -0.1
175,508 - -0.4
175,508 - +0.3
175,530 + +0.1
175,531 - -0.2
175,531 - -0.2
175,550 + -0.4
175,550 + -0.3
175,551 - -0.1

Or see this region's nucleotide sequence