Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4482

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4480 and Ac3H11_4481 are separated by 122 nucleotidesAc3H11_4481 and Ac3H11_4482 overlap by 4 nucleotidesAc3H11_4482 and Ac3H11_4483 are separated by 183 nucleotides Ac3H11_4480 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 66,260 to 67,396 _4480 Ac3H11_4481 - hypothetical protein, at 67,519 to 68,205 _4481 Ac3H11_4482 - Adenine-specific DNA methyltransferase, at 68,202 to 68,855 _4482 Ac3H11_4483 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 69,039 to 70,553 _4483 Position (kb) 68 69Strain fitness (log2 ratio) -2 -1 0 1 2 3at 67.482 kb on + strandat 67.482 kb on + strandat 67.483 kb on - strandat 67.483 kb on - strandat 67.483 kb on - strandat 67.483 kb on - strandat 67.483 kb on - strandat 67.487 kb on + strandat 67.487 kb on + strandat 67.487 kb on + strandat 67.487 kb on + strandat 67.488 kb on - strandat 67.488 kb on - strandat 67.488 kb on - strandat 67.488 kb on - strandat 67.664 kb on + strand, within Ac3H11_4481at 67.664 kb on + strand, within Ac3H11_4481at 67.664 kb on + strand, within Ac3H11_4481at 67.664 kb on + strand, within Ac3H11_4481at 67.664 kb on + strand, within Ac3H11_4481at 67.665 kb on - strand, within Ac3H11_4481at 67.665 kb on - strand, within Ac3H11_4481at 67.665 kb on - strand, within Ac3H11_4481at 67.665 kb on - strand, within Ac3H11_4481at 67.687 kb on - strand, within Ac3H11_4481at 67.687 kb on - strand, within Ac3H11_4481at 67.687 kb on - strand, within Ac3H11_4481at 67.714 kb on + strand, within Ac3H11_4481at 67.714 kb on + strand, within Ac3H11_4481at 67.714 kb on + strand, within Ac3H11_4481at 67.715 kb on - strand, within Ac3H11_4481at 67.771 kb on + strand, within Ac3H11_4481at 67.771 kb on + strand, within Ac3H11_4481at 67.771 kb on + strand, within Ac3H11_4481at 67.771 kb on + strand, within Ac3H11_4481at 67.772 kb on - strand, within Ac3H11_4481at 67.772 kb on - strand, within Ac3H11_4481at 67.772 kb on - strand, within Ac3H11_4481at 67.969 kb on - strand, within Ac3H11_4481at 68.058 kb on + strand, within Ac3H11_4481at 68.059 kb on - strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.103 kb on - strand, within Ac3H11_4481at 68.103 kb on - strand, within Ac3H11_4481at 68.103 kb on - strand, within Ac3H11_4481at 68.166 kb on + strandat 68.166 kb on + strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.203 kb on + strandat 68.215 kb on - strandat 68.215 kb on - strandat 68.215 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.922 kb on - strandat 68.922 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.962 kb on + strandat 68.962 kb on + strandat 68.962 kb on + strandat 68.962 kb on + strandat 68.963 kb on - strandat 68.963 kb on - strandat 68.963 kb on - strandat 68.963 kb on - strandat 69.098 kb on - strandat 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.403 kb on - strand, within Ac3H11_4483at 69.409 kb on + strand, within Ac3H11_4483at 69.409 kb on + strand, within Ac3H11_4483at 69.410 kb on - strand, within Ac3H11_4483at 69.410 kb on - strand, within Ac3H11_4483at 69.410 kb on - strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.683 kb on + strand, within Ac3H11_4483at 69.683 kb on + strand, within Ac3H11_4483at 69.684 kb on - strand, within Ac3H11_4483at 69.684 kb on - strand, within Ac3H11_4483at 69.691 kb on + strand, within Ac3H11_4483at 69.691 kb on + strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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67,482 + -0.4
67,482 + +0.1
67,483 - -1.2
67,483 - -0.5
67,483 - +0.3
67,483 - -0.8
67,483 - +1.3
67,487 + -0.0
67,487 + +0.7
67,487 + +0.8
67,487 + -0.2
67,488 - -0.1
67,488 - -0.5
67,488 - -0.0
67,488 - +0.3
67,664 + Ac3H11_4481 0.21 -0.4
67,664 + Ac3H11_4481 0.21 -0.1
67,664 + Ac3H11_4481 0.21 -0.6
67,664 + Ac3H11_4481 0.21 +1.0
67,664 + Ac3H11_4481 0.21 -0.6
67,665 - Ac3H11_4481 0.21 -0.4
67,665 - Ac3H11_4481 0.21 -0.1
67,665 - Ac3H11_4481 0.21 -0.0
67,665 - Ac3H11_4481 0.21 +0.6
67,687 - Ac3H11_4481 0.24 -1.4
67,687 - Ac3H11_4481 0.24 +0.2
67,687 - Ac3H11_4481 0.24 +0.3
67,714 + Ac3H11_4481 0.28 +1.2
67,714 + Ac3H11_4481 0.28 +0.3
67,714 + Ac3H11_4481 0.28 -0.0
67,715 - Ac3H11_4481 0.29 +1.2
67,771 + Ac3H11_4481 0.37 -0.3
67,771 + Ac3H11_4481 0.37 -0.3
67,771 + Ac3H11_4481 0.37 -1.0
67,771 + Ac3H11_4481 0.37 +0.0
67,772 - Ac3H11_4481 0.37 -0.2
67,772 - Ac3H11_4481 0.37 +3.0
67,772 - Ac3H11_4481 0.37 +0.9
67,969 - Ac3H11_4481 0.66 -0.0
68,058 + Ac3H11_4481 0.78 +0.9
68,059 - Ac3H11_4481 0.79 -0.3
68,102 + Ac3H11_4481 0.85 +1.1
68,102 + Ac3H11_4481 0.85 -0.4
68,102 + Ac3H11_4481 0.85 -0.1
68,102 + Ac3H11_4481 0.85 -0.6
68,102 + Ac3H11_4481 0.85 +0.7
68,103 - Ac3H11_4481 0.85 -0.1
68,103 - Ac3H11_4481 0.85 -0.1
68,103 - Ac3H11_4481 0.85 -0.3
68,166 + +0.1
68,166 + +1.3
68,167 - -0.2
68,167 - +0.6
68,167 - +0.1
68,167 - -1.1
68,167 - -0.1
68,203 + -0.2
68,215 - +0.3
68,215 - -0.8
68,215 - -0.8
68,898 - +0.6
68,898 - +0.1
68,898 - -0.7
68,898 - +0.1
68,898 - -1.1
68,922 - -0.8
68,922 - -0.2
68,936 - +0.0
68,936 - -0.6
68,936 - -0.0
68,936 - -0.6
68,936 - +0.4
68,962 + +1.3
68,962 + -1.5
68,962 + +0.1
68,962 + -0.8
68,963 - -0.0
68,963 - -0.4
68,963 - +2.1
68,963 - -0.5
69,098 - -2.1
69,402 + Ac3H11_4483 0.24 -0.2
69,402 + Ac3H11_4483 0.24 -0.0
69,402 + Ac3H11_4483 0.24 -2.4
69,402 + Ac3H11_4483 0.24 -1.4
69,402 + Ac3H11_4483 0.24 -0.6
69,402 + Ac3H11_4483 0.24 +0.4
69,402 + Ac3H11_4483 0.24 -0.2
69,402 + Ac3H11_4483 0.24 -0.5
69,403 - Ac3H11_4483 0.24 -1.0
69,409 + Ac3H11_4483 0.24 -1.0
69,409 + Ac3H11_4483 0.24 +0.4
69,410 - Ac3H11_4483 0.24 +1.2
69,410 - Ac3H11_4483 0.24 +0.3
69,410 - Ac3H11_4483 0.24 -0.4
69,487 + Ac3H11_4483 0.30 -0.3
69,487 + Ac3H11_4483 0.30 -0.2
69,487 + Ac3H11_4483 0.30 -0.6
69,487 + Ac3H11_4483 0.30 -0.2
69,487 + Ac3H11_4483 0.30 +0.1
69,487 + Ac3H11_4483 0.30 -0.3
69,487 + Ac3H11_4483 0.30 +0.8
69,487 + Ac3H11_4483 0.30 +0.6
69,487 + Ac3H11_4483 0.30 +1.7
69,487 + Ac3H11_4483 0.30 -0.3
69,488 - Ac3H11_4483 0.30 -0.3
69,488 - Ac3H11_4483 0.30 +0.6
69,488 - Ac3H11_4483 0.30 +0.6
69,488 - Ac3H11_4483 0.30 +1.1
69,488 - Ac3H11_4483 0.30 -0.3
69,488 - Ac3H11_4483 0.30 -0.3
69,488 - Ac3H11_4483 0.30 -0.8
69,683 + Ac3H11_4483 0.43 +0.4
69,683 + Ac3H11_4483 0.43 -0.7
69,684 - Ac3H11_4483 0.43 -0.9
69,684 - Ac3H11_4483 0.43 +0.6
69,691 + Ac3H11_4483 0.43 -0.6
69,691 + Ac3H11_4483 0.43 +0.0
69,692 - Ac3H11_4483 0.43 +0.1
69,692 - Ac3H11_4483 0.43 +0.1
69,692 - Ac3H11_4483 0.43 -1.6
69,692 - Ac3H11_4483 0.43 +0.1

Or see this region's nucleotide sequence