Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3674

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3672 and Ac3H11_3673 are separated by 139 nucleotidesAc3H11_3673 and Ac3H11_3674 are separated by 120 nucleotidesAc3H11_3674 and Ac3H11_3675 overlap by 33 nucleotides Ac3H11_3672 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 20,609 to 21,892 _3672 Ac3H11_3673 - putative exported protein, at 22,032 to 22,358 _3673 Ac3H11_3674 - hypothetical protein, at 22,479 to 22,673 _3674 Ac3H11_3675 - diguanylate cyclase with PAS/PAC sensor, at 22,641 to 24,377 _3675 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 21.506 kb on + strand, within Ac3H11_3672at 21.506 kb on + strand, within Ac3H11_3672at 21.506 kb on + strand, within Ac3H11_3672at 21.506 kb on + strand, within Ac3H11_3672at 21.507 kb on - strand, within Ac3H11_3672at 21.507 kb on - strand, within Ac3H11_3672at 21.507 kb on - strand, within Ac3H11_3672at 21.524 kb on + strand, within Ac3H11_3672at 21.524 kb on + strand, within Ac3H11_3672at 21.524 kb on + strand, within Ac3H11_3672at 21.524 kb on + strand, within Ac3H11_3672at 21.525 kb on - strand, within Ac3H11_3672at 21.525 kb on - strand, within Ac3H11_3672at 21.525 kb on - strand, within Ac3H11_3672at 21.525 kb on - strand, within Ac3H11_3672at 21.525 kb on - strand, within Ac3H11_3672at 21.611 kb on + strand, within Ac3H11_3672at 21.611 kb on + strand, within Ac3H11_3672at 21.611 kb on + strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.612 kb on - strand, within Ac3H11_3672at 21.686 kb on + strand, within Ac3H11_3672at 21.686 kb on + strand, within Ac3H11_3672at 21.686 kb on + strand, within Ac3H11_3672at 21.686 kb on + strand, within Ac3H11_3672at 21.686 kb on + strand, within Ac3H11_3672at 21.686 kb on + strandat 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.687 kb on - strand, within Ac3H11_3672at 21.962 kb on - strandat 21.974 kb on - strandat 22.319 kb on + strand, within Ac3H11_3673at 22.319 kb on + strand, within Ac3H11_3673at 22.552 kb on + strand, within Ac3H11_3674at 22.552 kb on + strand, within Ac3H11_3674at 22.552 kb on + strand, within Ac3H11_3674at 22.552 kb on + strand, within Ac3H11_3674at 22.552 kb on + strand, within Ac3H11_3674at 22.552 kb on + strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strandat 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.553 kb on - strand, within Ac3H11_3674at 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.794 kb on + strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.795 kb on - strandat 22.810 kb on - strandat 22.810 kb on - strandat 22.833 kb on + strand, within Ac3H11_3675at 22.833 kb on + strand, within Ac3H11_3675at 22.833 kb on + strand, within Ac3H11_3675at 22.834 kb on - strand, within Ac3H11_3675at 22.834 kb on - strand, within Ac3H11_3675at 22.834 kb on - strand, within Ac3H11_3675at 22.834 kb on - strand, within Ac3H11_3675at 22.834 kb on - strand, within Ac3H11_3675at 22.834 kb on - strand, within Ac3H11_3675at 22.878 kb on + strand, within Ac3H11_3675at 22.878 kb on + strand, within Ac3H11_3675at 22.879 kb on - strand, within Ac3H11_3675at 22.879 kb on - strand, within Ac3H11_3675at 22.879 kb on - strand, within Ac3H11_3675at 22.879 kb on - strand, within Ac3H11_3675at 22.879 kb on - strand, within Ac3H11_3675at 22.894 kb on + strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.895 kb on - strand, within Ac3H11_3675at 22.923 kb on + strand, within Ac3H11_3675at 22.923 kb on + strand, within Ac3H11_3675at 22.924 kb on - strand, within Ac3H11_3675at 22.924 kb on - strand, within Ac3H11_3675at 22.924 kb on - strand, within Ac3H11_3675at 22.924 kb on - strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.181 kb on + strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.182 kb on - strand, within Ac3H11_3675at 23.232 kb on + strand, within Ac3H11_3675at 23.403 kb on + strand, within Ac3H11_3675at 23.403 kb on + strand, within Ac3H11_3675at 23.403 kb on + strand, within Ac3H11_3675at 23.403 kb on + strand, within Ac3H11_3675at 23.403 kb on + strand, within Ac3H11_3675at 23.403 kb on + strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.404 kb on - strand, within Ac3H11_3675at 23.661 kb on + strand, within Ac3H11_3675at 23.661 kb on + strand, within Ac3H11_3675at 23.661 kb on + strand, within Ac3H11_3675

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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21,506 + Ac3H11_3672 0.70 -0.7
21,506 + Ac3H11_3672 0.70 -0.2
21,506 + Ac3H11_3672 0.70 +0.5
21,506 + Ac3H11_3672 0.70 +0.1
21,507 - Ac3H11_3672 0.70 -0.5
21,507 - Ac3H11_3672 0.70 -0.2
21,507 - Ac3H11_3672 0.70 -0.5
21,524 + Ac3H11_3672 0.71 -1.0
21,524 + Ac3H11_3672 0.71 -0.1
21,524 + Ac3H11_3672 0.71 +0.2
21,524 + Ac3H11_3672 0.71 +0.4
21,525 - Ac3H11_3672 0.71 -0.1
21,525 - Ac3H11_3672 0.71 -1.4
21,525 - Ac3H11_3672 0.71 +0.4
21,525 - Ac3H11_3672 0.71 +0.2
21,525 - Ac3H11_3672 0.71 +0.1
21,611 + Ac3H11_3672 0.78 +0.2
21,611 + Ac3H11_3672 0.78 +0.5
21,611 + Ac3H11_3672 0.78 +0.1
21,612 - Ac3H11_3672 0.78 +1.3
21,612 - Ac3H11_3672 0.78 +0.6
21,612 - Ac3H11_3672 0.78 -0.4
21,612 - Ac3H11_3672 0.78 +0.3
21,612 - Ac3H11_3672 0.78 -2.7
21,612 - Ac3H11_3672 0.78 +0.1
21,612 - Ac3H11_3672 0.78 +0.3
21,612 - Ac3H11_3672 0.78 +0.1
21,686 + Ac3H11_3672 0.84 +1.9
21,686 + Ac3H11_3672 0.84 -0.2
21,686 + Ac3H11_3672 0.84 -0.4
21,686 + Ac3H11_3672 0.84 -0.7
21,686 + Ac3H11_3672 0.84 -0.3
21,686 + +1.6
21,687 - Ac3H11_3672 0.84 +1.6
21,687 - Ac3H11_3672 0.84 -0.5
21,687 - Ac3H11_3672 0.84 -1.1
21,687 - Ac3H11_3672 0.84 +0.6
21,687 - Ac3H11_3672 0.84 +0.5
21,687 - Ac3H11_3672 0.84 -0.4
21,687 - Ac3H11_3672 0.84 -0.3
21,687 - Ac3H11_3672 0.84 +0.5
21,962 - +0.1
21,974 - +0.0
22,319 + Ac3H11_3673 0.88 +0.5
22,319 + Ac3H11_3673 0.88 +0.7
22,552 + Ac3H11_3674 0.37 -0.4
22,552 + Ac3H11_3674 0.37 +1.3
22,552 + Ac3H11_3674 0.37 +0.4
22,552 + Ac3H11_3674 0.37 -1.2
22,552 + Ac3H11_3674 0.37 +1.1
22,552 + Ac3H11_3674 0.37 -0.0
22,553 - Ac3H11_3674 0.38 +1.0
22,553 - Ac3H11_3674 0.38 -0.6
22,553 - Ac3H11_3674 0.38 +1.1
22,553 - Ac3H11_3674 0.38 -0.1
22,553 - +1.6
22,553 - Ac3H11_3674 0.38 -0.2
22,553 - Ac3H11_3674 0.38 +0.7
22,553 - Ac3H11_3674 0.38 -0.7
22,553 - Ac3H11_3674 0.38 -0.3
22,553 - Ac3H11_3674 0.38 -0.1
22,553 - Ac3H11_3674 0.38 -0.2
22,553 - Ac3H11_3674 0.38 -0.0
22,553 - Ac3H11_3674 0.38 +5.9
22,553 - Ac3H11_3674 0.38 +1.0
22,794 + +0.7
22,794 + +0.2
22,794 + -0.1
22,794 + -0.9
22,794 + +0.2
22,794 + -0.1
22,794 + -0.7
22,794 + -0.3
22,794 + +0.6
22,794 + +0.7
22,794 + +0.2
22,795 - -1.0
22,795 - +1.1
22,795 - +0.5
22,795 - +0.3
22,795 - -0.3
22,795 - -0.5
22,795 - +0.5
22,795 - -0.1
22,795 - -0.1
22,795 - -0.1
22,795 - +0.3
22,795 - -0.8
22,795 - -0.3
22,795 - +0.8
22,795 - +0.4
22,810 - -0.4
22,810 - +0.1
22,833 + Ac3H11_3675 0.11 +0.0
22,833 + Ac3H11_3675 0.11 +0.2
22,833 + Ac3H11_3675 0.11 -0.3
22,834 - Ac3H11_3675 0.11 +0.1
22,834 - Ac3H11_3675 0.11 -1.0
22,834 - Ac3H11_3675 0.11 -1.1
22,834 - Ac3H11_3675 0.11 -0.2
22,834 - Ac3H11_3675 0.11 +0.8
22,834 - Ac3H11_3675 0.11 +0.4
22,878 + Ac3H11_3675 0.14 +0.2
22,878 + Ac3H11_3675 0.14 -0.2
22,879 - Ac3H11_3675 0.14 +0.7
22,879 - Ac3H11_3675 0.14 -0.6
22,879 - Ac3H11_3675 0.14 -0.9
22,879 - Ac3H11_3675 0.14 -0.2
22,879 - Ac3H11_3675 0.14 -0.7
22,894 + Ac3H11_3675 0.15 +0.1
22,895 - Ac3H11_3675 0.15 +0.9
22,895 - Ac3H11_3675 0.15 -0.5
22,895 - Ac3H11_3675 0.15 -0.5
22,895 - Ac3H11_3675 0.15 -1.0
22,895 - Ac3H11_3675 0.15 +0.6
22,895 - Ac3H11_3675 0.15 +0.3
22,895 - Ac3H11_3675 0.15 -0.6
22,923 + Ac3H11_3675 0.16 -0.0
22,923 + Ac3H11_3675 0.16 -0.3
22,924 - Ac3H11_3675 0.16 -0.8
22,924 - Ac3H11_3675 0.16 +0.6
22,924 - Ac3H11_3675 0.16 -0.0
22,924 - Ac3H11_3675 0.16 -0.6
23,181 + Ac3H11_3675 0.31 +0.3
23,181 + Ac3H11_3675 0.31 -0.3
23,181 + Ac3H11_3675 0.31 -0.8
23,181 + Ac3H11_3675 0.31 -0.7
23,181 + Ac3H11_3675 0.31 +0.0
23,181 + Ac3H11_3675 0.31 -0.7
23,181 + Ac3H11_3675 0.31 +0.1
23,181 + Ac3H11_3675 0.31 -0.8
23,181 + Ac3H11_3675 0.31 +0.6
23,181 + Ac3H11_3675 0.31 -0.4
23,181 + Ac3H11_3675 0.31 +0.0
23,181 + Ac3H11_3675 0.31 +0.4
23,181 + Ac3H11_3675 0.31 +0.0
23,181 + Ac3H11_3675 0.31 -1.4
23,181 + Ac3H11_3675 0.31 +0.2
23,181 + Ac3H11_3675 0.31 -0.4
23,181 + Ac3H11_3675 0.31 -0.3
23,181 + Ac3H11_3675 0.31 -0.1
23,181 + Ac3H11_3675 0.31 +0.8
23,181 + Ac3H11_3675 0.31 -1.1
23,181 + Ac3H11_3675 0.31 -0.4
23,182 - Ac3H11_3675 0.31 -0.2
23,182 - Ac3H11_3675 0.31 +1.7
23,182 - Ac3H11_3675 0.31 +0.5
23,182 - Ac3H11_3675 0.31 -0.4
23,182 - Ac3H11_3675 0.31 -0.4
23,182 - Ac3H11_3675 0.31 +0.2
23,182 - Ac3H11_3675 0.31 -1.2
23,182 - Ac3H11_3675 0.31 -1.1
23,182 - Ac3H11_3675 0.31 -0.4
23,182 - Ac3H11_3675 0.31 +0.8
23,182 - Ac3H11_3675 0.31 -1.0
23,182 - Ac3H11_3675 0.31 +0.7
23,182 - Ac3H11_3675 0.31 -0.4
23,182 - Ac3H11_3675 0.31 -0.6
23,182 - Ac3H11_3675 0.31 -0.1
23,182 - Ac3H11_3675 0.31 -0.9
23,182 - Ac3H11_3675 0.31 +0.4
23,232 + Ac3H11_3675 0.34 +1.6
23,403 + Ac3H11_3675 0.44 +1.1
23,403 + Ac3H11_3675 0.44 +0.3
23,403 + Ac3H11_3675 0.44 +1.4
23,403 + Ac3H11_3675 0.44 -1.1
23,403 + Ac3H11_3675 0.44 +0.2
23,403 + Ac3H11_3675 0.44 +0.7
23,404 - Ac3H11_3675 0.44 +0.4
23,404 - Ac3H11_3675 0.44 +0.3
23,404 - Ac3H11_3675 0.44 -1.8
23,404 - Ac3H11_3675 0.44 +0.3
23,404 - Ac3H11_3675 0.44 -0.6
23,404 - Ac3H11_3675 0.44 +0.5
23,404 - Ac3H11_3675 0.44 +0.0
23,404 - Ac3H11_3675 0.44 +0.8
23,404 - Ac3H11_3675 0.44 +1.2
23,404 - Ac3H11_3675 0.44 +0.5
23,404 - Ac3H11_3675 0.44 +0.7
23,404 - Ac3H11_3675 0.44 -0.4
23,661 + Ac3H11_3675 0.59 +0.6
23,661 + Ac3H11_3675 0.59 +0.6
23,661 + Ac3H11_3675 0.59 +0.5

Or see this region's nucleotide sequence