Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3529 and Ac3H11_3530 are separated by 314 nucleotides Ac3H11_3530 and Ac3H11_3531 overlap by 44 nucleotides Ac3H11_3531 and Ac3H11_3532 are separated by 136 nucleotides
Ac3H11_3529 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,146 to 75,741
_3529
Ac3H11_3530 - Ankyrin, at 76,056 to 77,477
_3530
Ac3H11_3531 - Ankyrin, at 77,434 to 77,694
_3531
Ac3H11_3532 - L-carnitine dehydratase/bile acid-inducible protein F, at 77,831 to 79,105
_3532
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 75.368 kb on + strand, within Ac3H11_3529 at 75.635 kb on + strand at 75.635 kb on + strand at 75.635 kb on + strand at 75.635 kb on + strand at 75.636 kb on - strand at 75.636 kb on - strand at 75.797 kb on - strand at 75.797 kb on - strand at 75.803 kb on + strand at 75.803 kb on + strand at 75.803 kb on + strand at 75.803 kb on + strand at 75.804 kb on - strand at 75.804 kb on - strand at 75.804 kb on - strand at 75.804 kb on - strand at 75.804 kb on - strand at 75.804 kb on - strand at 75.804 kb on - strand at 75.804 kb on - strand at 76.795 kb on - strand, within Ac3H11_3530 at 76.912 kb on + strand, within Ac3H11_3530 at 76.912 kb on + strand, within Ac3H11_3530 at 76.913 kb on - strand, within Ac3H11_3530 at 76.913 kb on - strand, within Ac3H11_3530 at 76.913 kb on - strand, within Ac3H11_3530 at 76.913 kb on - strand, within Ac3H11_3530 at 76.913 kb on - strand, within Ac3H11_3530 at 76.913 kb on - strand, within Ac3H11_3530 at 77.832 kb on + strand at 78.203 kb on + strand, within Ac3H11_3532 at 78.204 kb on - strand, within Ac3H11_3532
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 75,368 + Ac3H11_3529 0.77 +1.4 75,635 + -0.2 75,635 + -2.2 75,635 + +0.3 75,635 + +0.2 75,636 - -0.3 75,636 - -0.7 75,797 - -0.5 75,797 - -0.1 75,803 + +0.2 75,803 + +1.2 75,803 + +0.8 75,803 + +0.2 75,804 - +0.2 75,804 - +0.2 75,804 - -0.3 75,804 - -0.1 75,804 - -1.6 75,804 - -0.1 75,804 - -1.5 75,804 - +0.2 76,795 - Ac3H11_3530 0.52 -1.0 76,912 + Ac3H11_3530 0.60 -0.5 76,912 + Ac3H11_3530 0.60 +0.8 76,913 - Ac3H11_3530 0.60 -0.6 76,913 - Ac3H11_3530 0.60 -0.6 76,913 - Ac3H11_3530 0.60 -1.1 76,913 - Ac3H11_3530 0.60 +1.1 76,913 - Ac3H11_3530 0.60 -0.5 76,913 - Ac3H11_3530 0.60 +0.8 77,832 + -0.4 78,203 + Ac3H11_3532 0.29 -1.6 78,204 - Ac3H11_3532 0.29 -0.1
Or see this region's nucleotide sequence