Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3524 and Ac3H11_3525 are separated by 96 nucleotides Ac3H11_3525 and Ac3H11_3526 overlap by 36 nucleotides
Ac3H11_3524 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 70,186 to 71,193
_3524
Ac3H11_3525 - hypothetical protein, at 71,290 to 71,421
_3525
Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324
_3526
Position (kb)
71
72 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.533 kb on - strand, within Ac3H11_3524 at 70.605 kb on - strand, within Ac3H11_3524 at 71.163 kb on + strand at 71.163 kb on + strand at 71.163 kb on + strand at 71.164 kb on - strand at 71.164 kb on - strand at 71.291 kb on + strand at 71.292 kb on - strand at 71.292 kb on - strand at 71.292 kb on - strand at 71.349 kb on + strand, within Ac3H11_3525 at 71.595 kb on + strand, within Ac3H11_3526 at 71.596 kb on - strand, within Ac3H11_3526 at 71.961 kb on + strand, within Ac3H11_3526 at 71.961 kb on + strand, within Ac3H11_3526 at 71.993 kb on - strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.270 kb on + strand at 72.322 kb on + strand at 72.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 70,493 + Ac3H11_3524 0.30 +0.4 70,493 + Ac3H11_3524 0.30 -0.2 70,493 + Ac3H11_3524 0.30 -0.7 70,493 + Ac3H11_3524 0.30 +0.3 70,494 - Ac3H11_3524 0.31 -0.5 70,494 - Ac3H11_3524 0.31 -0.5 70,494 - Ac3H11_3524 0.31 +0.4 70,494 - Ac3H11_3524 0.31 +0.2 70,494 - Ac3H11_3524 0.31 -0.4 70,494 - Ac3H11_3524 0.31 +0.5 70,494 - Ac3H11_3524 0.31 -0.0 70,532 + Ac3H11_3524 0.34 +0.7 70,532 + Ac3H11_3524 0.34 -0.1 70,532 + Ac3H11_3524 0.34 -0.0 70,532 + Ac3H11_3524 0.34 +0.7 70,532 + Ac3H11_3524 0.34 +0.3 70,533 - Ac3H11_3524 0.34 -0.6 70,605 - Ac3H11_3524 0.42 +0.8 71,163 + +0.4 71,163 + -0.1 71,163 + -0.2 71,164 - -1.3 71,164 - +0.3 71,291 + -0.3 71,292 - +0.1 71,292 - -0.1 71,292 - -2.1 71,349 + Ac3H11_3525 0.45 -0.7 71,595 + Ac3H11_3526 0.22 +0.9 71,596 - Ac3H11_3526 0.22 +0.9 71,961 + Ac3H11_3526 0.61 -0.3 71,961 + Ac3H11_3526 0.61 -0.2 71,993 - Ac3H11_3526 0.65 -0.6 72,157 + Ac3H11_3526 0.82 +1.1 72,157 + Ac3H11_3526 0.82 +0.0 72,157 + Ac3H11_3526 0.82 +0.1 72,158 - Ac3H11_3526 0.82 +0.3 72,158 - Ac3H11_3526 0.82 -0.5 72,158 - Ac3H11_3526 0.82 +0.0 72,217 + Ac3H11_3526 0.88 -0.5 72,217 + Ac3H11_3526 0.88 +0.7 72,217 + Ac3H11_3526 0.88 +2.2 72,270 + +1.0 72,322 + +0.5 72,338 - -0.4
Or see this region's nucleotide sequence