Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2702

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2701 and Ac3H11_2702 are separated by 78 nucleotidesAc3H11_2702 and Ac3H11_2703 overlap by 22 nucleotides Ac3H11_2701 - FIG002188: hypothetical protein, at 997,882 to 998,817 _2701 Ac3H11_2702 - hypothetical protein, at 998,896 to 999,321 _2702 Ac3H11_2703 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 999,300 to 1,000,028 _2703 Position (kb) 998 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1at 997.907 kb on - strandat 997.992 kb on - strand, within Ac3H11_2701at 998.013 kb on - strand, within Ac3H11_2701at 998.013 kb on - strand, within Ac3H11_2701at 998.052 kb on - strand, within Ac3H11_2701at 998.052 kb on - strand, within Ac3H11_2701at 998.052 kb on - strand, within Ac3H11_2701at 998.150 kb on + strand, within Ac3H11_2701at 998.150 kb on + strand, within Ac3H11_2701at 998.165 kb on + strand, within Ac3H11_2701at 998.165 kb on + strand, within Ac3H11_2701at 998.288 kb on + strand, within Ac3H11_2701at 998.289 kb on - strand, within Ac3H11_2701at 998.289 kb on - strand, within Ac3H11_2701at 998.300 kb on + strand, within Ac3H11_2701at 998.301 kb on - strand, within Ac3H11_2701at 998.309 kb on + strand, within Ac3H11_2701at 998.390 kb on + strand, within Ac3H11_2701at 998.390 kb on + strand, within Ac3H11_2701at 998.391 kb on - strand, within Ac3H11_2701at 998.472 kb on + strand, within Ac3H11_2701at 998.472 kb on + strand, within Ac3H11_2701at 998.473 kb on - strand, within Ac3H11_2701at 998.473 kb on - strand, within Ac3H11_2701at 998.474 kb on + strand, within Ac3H11_2701at 998.474 kb on + strand, within Ac3H11_2701at 998.474 kb on + strand, within Ac3H11_2701at 998.539 kb on + strand, within Ac3H11_2701at 998.540 kb on - strand, within Ac3H11_2701at 998.540 kb on - strand, within Ac3H11_2701at 998.618 kb on + strand, within Ac3H11_2701at 998.619 kb on - strand, within Ac3H11_2701at 998.637 kb on - strand, within Ac3H11_2701at 998.658 kb on + strand, within Ac3H11_2701at 998.658 kb on + strand, within Ac3H11_2701at 998.729 kb on + strandat 998.887 kb on + strandat 998.887 kb on + strandat 998.918 kb on + strandat 998.918 kb on + strandat 998.918 kb on + strandat 998.919 kb on - strandat 998.919 kb on - strandat 998.921 kb on + strandat 998.922 kb on - strandat 998.922 kb on - strandat 998.922 kb on - strandat 999.006 kb on - strand, within Ac3H11_2702at 999.229 kb on + strand, within Ac3H11_2702at 999.230 kb on - strand, within Ac3H11_2702at 999.230 kb on - strand, within Ac3H11_2702at 999.231 kb on + strand, within Ac3H11_2702at 999.231 kb on + strand, within Ac3H11_2702at 999.285 kb on + strandat 999.285 kb on + strandat 999.286 kb on - strandat 999.286 kb on - strandat 999.286 kb on - strandat 999.286 kb on - strandat 999.286 kb on - strandat 999.319 kb on + strandat 999.474 kb on + strand, within Ac3H11_2703at 999.496 kb on + strand, within Ac3H11_2703at 999.497 kb on - strand, within Ac3H11_2703at 999.497 kb on - strand, within Ac3H11_2703at 999.497 kb on - strand, within Ac3H11_2703at 999.497 kb on - strand, within Ac3H11_2703at 999.538 kb on + strand, within Ac3H11_2703at 999.646 kb on - strand, within Ac3H11_2703at 999.854 kb on + strand, within Ac3H11_2703at 999.854 kb on + strand, within Ac3H11_2703at 999.854 kb on + strand, within Ac3H11_2703at 999.855 kb on - strand, within Ac3H11_2703at 999.994 kb on - strandat 1000.248 kb on + strandat 1000.248 kb on + strandat 1000.249 kb on - strandat 1000.257 kb on + strandat 1000.257 kb on + strandat 1000.257 kb on + strandat 1000.257 kb on + strandat 1000.257 kb on + strandat 1000.257 kb on + strandat 1000.258 kb on - strandat 1000.258 kb on - strandat 1000.258 kb on - strandat 1000.258 kb on - strandat 1000.258 kb on - strandat 1000.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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997,907 - +0.2
997,992 - Ac3H11_2701 0.12 +0.5
998,013 - Ac3H11_2701 0.14 -0.6
998,013 - Ac3H11_2701 0.14 +0.9
998,052 - Ac3H11_2701 0.18 -0.7
998,052 - Ac3H11_2701 0.18 -0.4
998,052 - Ac3H11_2701 0.18 +0.5
998,150 + Ac3H11_2701 0.29 -1.7
998,150 + Ac3H11_2701 0.29 +0.2
998,165 + Ac3H11_2701 0.30 -0.3
998,165 + Ac3H11_2701 0.30 -0.5
998,288 + Ac3H11_2701 0.43 -0.1
998,289 - Ac3H11_2701 0.43 +0.2
998,289 - Ac3H11_2701 0.43 -0.5
998,300 + Ac3H11_2701 0.45 -0.2
998,301 - Ac3H11_2701 0.45 +0.7
998,309 + Ac3H11_2701 0.46 -0.4
998,390 + Ac3H11_2701 0.54 -0.6
998,390 + Ac3H11_2701 0.54 +0.9
998,391 - Ac3H11_2701 0.54 +0.2
998,472 + Ac3H11_2701 0.63 -0.6
998,472 + Ac3H11_2701 0.63 +0.8
998,473 - Ac3H11_2701 0.63 -2.9
998,473 - Ac3H11_2701 0.63 -0.1
998,474 + Ac3H11_2701 0.63 -0.3
998,474 + Ac3H11_2701 0.63 +0.8
998,474 + Ac3H11_2701 0.63 -0.1
998,539 + Ac3H11_2701 0.70 +0.3
998,540 - Ac3H11_2701 0.70 -0.1
998,540 - Ac3H11_2701 0.70 +0.4
998,618 + Ac3H11_2701 0.79 +0.4
998,619 - Ac3H11_2701 0.79 +0.7
998,637 - Ac3H11_2701 0.81 +0.8
998,658 + Ac3H11_2701 0.83 -0.5
998,658 + Ac3H11_2701 0.83 +0.7
998,729 + -0.1
998,887 + +0.3
998,887 + +0.2
998,918 + +0.2
998,918 + -0.9
998,918 + +0.3
998,919 - +0.7
998,919 - +0.5
998,921 + -0.4
998,922 - +1.0
998,922 - +0.8
998,922 - +0.6
999,006 - Ac3H11_2702 0.26 +0.1
999,229 + Ac3H11_2702 0.78 -0.6
999,230 - Ac3H11_2702 0.78 -0.6
999,230 - Ac3H11_2702 0.78 -1.4
999,231 + Ac3H11_2702 0.79 -1.8
999,231 + Ac3H11_2702 0.79 +0.1
999,285 + +0.3
999,285 + +0.5
999,286 - +0.1
999,286 - -0.7
999,286 - +1.2
999,286 - -0.2
999,286 - +0.0
999,319 + -0.4
999,474 + Ac3H11_2703 0.24 -0.5
999,496 + Ac3H11_2703 0.27 -0.6
999,497 - Ac3H11_2703 0.27 -0.4
999,497 - Ac3H11_2703 0.27 -1.5
999,497 - Ac3H11_2703 0.27 +0.4
999,497 - Ac3H11_2703 0.27 -1.0
999,538 + Ac3H11_2703 0.33 +1.0
999,646 - Ac3H11_2703 0.47 +0.7
999,854 + Ac3H11_2703 0.76 +1.5
999,854 + Ac3H11_2703 0.76 +0.4
999,854 + Ac3H11_2703 0.76 -2.1
999,855 - Ac3H11_2703 0.76 -0.2
999,994 - +0.3
1,000,248 + -0.1
1,000,248 + -0.2
1,000,249 - -1.1
1,000,257 + -0.3
1,000,257 + +0.3
1,000,257 + -2.5
1,000,257 + -0.2
1,000,257 + +1.2
1,000,257 + +1.1
1,000,258 - -0.5
1,000,258 - -0.3
1,000,258 - -0.6
1,000,258 - +0.5
1,000,258 - -0.1
1,000,262 - +0.3

Or see this region's nucleotide sequence