Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1345

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1344 and Ac3H11_1345 are separated by 288 nucleotidesAc3H11_1345 and Ac3H11_1346 are separated by 163 nucleotides Ac3H11_1344 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 32,573 to 34,783 _1344 Ac3H11_1345 - putative exported protein, at 35,072 to 38,914 _1345 Ac3H11_1346 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 39,078 to 39,830 _1346 Position (kb) 35 36 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 34.793 kb on - strandat 34.945 kb on + strandat 34.945 kb on + strandat 34.990 kb on - strandat 35.145 kb on - strandat 35.159 kb on + strandat 35.159 kb on + strandat 35.159 kb on + strandat 35.159 kb on + strandat 35.160 kb on - strandat 35.184 kb on + strandat 35.184 kb on + strandat 35.340 kb on + strandat 35.340 kb on + strandat 35.364 kb on + strandat 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.895 kb on + strand, within Ac3H11_1345at 35.896 kb on - strand, within Ac3H11_1345at 35.896 kb on - strand, within Ac3H11_1345at 35.896 kb on - strand, within Ac3H11_1345at 35.896 kb on - strand, within Ac3H11_1345at 35.896 kb on - strand, within Ac3H11_1345at 35.943 kb on + strand, within Ac3H11_1345at 35.944 kb on - strand, within Ac3H11_1345at 35.944 kb on - strand, within Ac3H11_1345at 35.955 kb on + strand, within Ac3H11_1345at 35.955 kb on + strand, within Ac3H11_1345at 35.956 kb on - strand, within Ac3H11_1345at 35.987 kb on + strand, within Ac3H11_1345at 35.988 kb on - strand, within Ac3H11_1345at 35.988 kb on - strand, within Ac3H11_1345at 35.988 kb on - strand, within Ac3H11_1345at 35.988 kb on - strand, within Ac3H11_1345at 36.171 kb on + strand, within Ac3H11_1345at 36.171 kb on + strand, within Ac3H11_1345at 36.172 kb on - strand, within Ac3H11_1345at 36.172 kb on - strand, within Ac3H11_1345at 36.343 kb on + strand, within Ac3H11_1345at 36.344 kb on - strand, within Ac3H11_1345at 36.344 kb on - strand, within Ac3H11_1345at 36.503 kb on + strand, within Ac3H11_1345at 36.504 kb on - strand, within Ac3H11_1345at 36.736 kb on - strand, within Ac3H11_1345at 37.398 kb on - strand, within Ac3H11_1345at 37.967 kb on + strand, within Ac3H11_1345at 37.967 kb on + strand, within Ac3H11_1345at 37.967 kb on + strand, within Ac3H11_1345at 37.968 kb on - strand, within Ac3H11_1345at 37.968 kb on - strand, within Ac3H11_1345at 37.998 kb on + strand, within Ac3H11_1345at 37.998 kb on + strand, within Ac3H11_1345at 37.998 kb on + strand, within Ac3H11_1345at 37.999 kb on - strand, within Ac3H11_1345at 37.999 kb on - strand, within Ac3H11_1345at 38.160 kb on + strand, within Ac3H11_1345at 38.160 kb on + strand, within Ac3H11_1345at 38.161 kb on - strand, within Ac3H11_1345at 38.161 kb on - strand, within Ac3H11_1345at 38.161 kb on - strand, within Ac3H11_1345at 38.169 kb on + strand, within Ac3H11_1345at 38.169 kb on + strand, within Ac3H11_1345at 38.169 kb on + strand, within Ac3H11_1345at 38.170 kb on - strand, within Ac3H11_1345at 38.170 kb on - strand, within Ac3H11_1345at 38.170 kb on - strand, within Ac3H11_1345at 38.170 kb on - strand, within Ac3H11_1345at 38.170 kb on - strand, within Ac3H11_1345at 38.424 kb on + strand, within Ac3H11_1345at 38.424 kb on + strand, within Ac3H11_1345at 38.424 kb on + strand, within Ac3H11_1345at 38.425 kb on - strand, within Ac3H11_1345at 38.425 kb on - strand, within Ac3H11_1345at 38.425 kb on - strand, within Ac3H11_1345at 38.508 kb on + strand, within Ac3H11_1345at 38.509 kb on - strand, within Ac3H11_1345at 38.613 kb on + strandat 38.613 kb on + strandat 38.614 kb on - strandat 38.614 kb on - strandat 38.614 kb on - strandat 38.614 kb on - strandat 38.614 kb on - strandat 38.977 kb on + strandat 39.727 kb on + strand, within Ac3H11_1346at 39.800 kb on - strandat 39.881 kb on + strandat 39.882 kb on - strandat 39.882 kb on - strandat 39.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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34,793 - +0.7
34,945 + -2.0
34,945 + -1.4
34,990 - -1.3
35,145 - +1.3
35,159 + -0.1
35,159 + +0.0
35,159 + -1.7
35,159 + -0.2
35,160 - -0.1
35,184 + -0.3
35,184 + -0.4
35,340 + +0.1
35,340 + +0.1
35,364 + -0.8
35,895 + Ac3H11_1345 0.21 +0.2
35,895 + Ac3H11_1345 0.21 +0.0
35,895 + Ac3H11_1345 0.21 -0.0
35,895 + Ac3H11_1345 0.21 +0.3
35,895 + Ac3H11_1345 0.21 -0.9
35,895 + Ac3H11_1345 0.21 -1.2
35,895 + Ac3H11_1345 0.21 -0.1
35,895 + Ac3H11_1345 0.21 +0.1
35,896 - Ac3H11_1345 0.21 -0.2
35,896 - Ac3H11_1345 0.21 -1.4
35,896 - Ac3H11_1345 0.21 -0.9
35,896 - Ac3H11_1345 0.21 +1.0
35,896 - Ac3H11_1345 0.21 -0.4
35,943 + Ac3H11_1345 0.23 +0.8
35,944 - Ac3H11_1345 0.23 -0.5
35,944 - Ac3H11_1345 0.23 +0.0
35,955 + Ac3H11_1345 0.23 -0.1
35,955 + Ac3H11_1345 0.23 -0.1
35,956 - Ac3H11_1345 0.23 -0.6
35,987 + Ac3H11_1345 0.24 +0.7
35,988 - Ac3H11_1345 0.24 -0.1
35,988 - Ac3H11_1345 0.24 +0.3
35,988 - Ac3H11_1345 0.24 +0.9
35,988 - Ac3H11_1345 0.24 +0.6
36,171 + Ac3H11_1345 0.29 -0.9
36,171 + Ac3H11_1345 0.29 +0.3
36,172 - Ac3H11_1345 0.29 +0.8
36,172 - Ac3H11_1345 0.29 -1.6
36,343 + Ac3H11_1345 0.33 -0.3
36,344 - Ac3H11_1345 0.33 -1.3
36,344 - Ac3H11_1345 0.33 -0.7
36,503 + Ac3H11_1345 0.37 -2.1
36,504 - Ac3H11_1345 0.37 -0.5
36,736 - Ac3H11_1345 0.43 -0.5
37,398 - Ac3H11_1345 0.61 +3.8
37,967 + Ac3H11_1345 0.75 +0.2
37,967 + Ac3H11_1345 0.75 -0.2
37,967 + Ac3H11_1345 0.75 -0.4
37,968 - Ac3H11_1345 0.75 +0.7
37,968 - Ac3H11_1345 0.75 -0.5
37,998 + Ac3H11_1345 0.76 -0.2
37,998 + Ac3H11_1345 0.76 -1.0
37,998 + Ac3H11_1345 0.76 +0.1
37,999 - Ac3H11_1345 0.76 +0.0
37,999 - Ac3H11_1345 0.76 -0.6
38,160 + Ac3H11_1345 0.80 +0.7
38,160 + Ac3H11_1345 0.80 +0.4
38,161 - Ac3H11_1345 0.80 -0.2
38,161 - Ac3H11_1345 0.80 -0.9
38,161 - Ac3H11_1345 0.80 -0.3
38,169 + Ac3H11_1345 0.81 +0.1
38,169 + Ac3H11_1345 0.81 -0.3
38,169 + Ac3H11_1345 0.81 -0.7
38,170 - Ac3H11_1345 0.81 -0.0
38,170 - Ac3H11_1345 0.81 +1.1
38,170 - Ac3H11_1345 0.81 -0.3
38,170 - Ac3H11_1345 0.81 +0.3
38,170 - Ac3H11_1345 0.81 -0.3
38,424 + Ac3H11_1345 0.87 -0.9
38,424 + Ac3H11_1345 0.87 -0.8
38,424 + Ac3H11_1345 0.87 -0.6
38,425 - Ac3H11_1345 0.87 +0.3
38,425 - Ac3H11_1345 0.87 -0.1
38,425 - Ac3H11_1345 0.87 +1.6
38,508 + Ac3H11_1345 0.89 -0.2
38,509 - Ac3H11_1345 0.89 -0.8
38,613 + -0.3
38,613 + +0.2
38,614 - +0.2
38,614 - -0.5
38,614 - -0.8
38,614 - +0.5
38,614 - +0.1
38,977 + -0.4
39,727 + Ac3H11_1346 0.86 -1.0
39,800 - -0.9
39,881 + +0.8
39,882 - -0.5
39,882 - -1.0
39,882 - -0.5

Or see this region's nucleotide sequence