Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26805 and AO353_26810 overlap by 4 nucleotides AO353_26810 and AO353_26815 are separated by 316 nucleotides AO353_26815 and AO353_26820 overlap by 23 nucleotides
AO353_26805: AO353_26805 - (2Fe-2S)-binding protein, at 5,871,732 to 5,873,141
_26805
AO353_26810: AO353_26810 - (2Fe-2S)-binding protein, at 5,873,138 to 5,873,452
_26810
AO353_26815: AO353_26815 - transcriptional regulator, at 5,873,769 to 5,874,452
_26815
AO353_26820: AO353_26820 - histidine kinase, at 5,874,430 to 5,875,824
_26820
Position (kb) 5873
5874
5875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5872.776 kb on + strand, within AO353_26805 at 5872.782 kb on - strand, within AO353_26805 at 5872.982 kb on - strand, within AO353_26805 at 5872.982 kb on - strand, within AO353_26805 at 5872.982 kb on - strand, within AO353_26805 at 5872.982 kb on - strand, within AO353_26805 at 5873.017 kb on + strand at 5873.018 kb on - strand at 5873.141 kb on + strand at 5873.141 kb on + strand at 5873.141 kb on + strand at 5873.141 kb on + strand at 5873.142 kb on - strand at 5873.142 kb on - strand at 5873.142 kb on - strand at 5873.142 kb on - strand at 5873.142 kb on - strand at 5873.277 kb on + strand, within AO353_26810 at 5873.305 kb on + strand, within AO353_26810 at 5873.305 kb on + strand, within AO353_26810 at 5873.401 kb on + strand, within AO353_26810 at 5873.401 kb on + strand, within AO353_26810 at 5873.401 kb on + strand, within AO353_26810 at 5873.402 kb on - strand, within AO353_26810 at 5873.402 kb on - strand, within AO353_26810 at 5873.402 kb on - strand at 5873.402 kb on - strand, within AO353_26810 at 5873.434 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.543 kb on - strand at 5873.543 kb on - strand at 5873.543 kb on - strand at 5873.556 kb on - strand at 5873.574 kb on + strand at 5873.580 kb on - strand at 5873.586 kb on + strand at 5873.681 kb on - strand at 5873.701 kb on + strand at 5873.702 kb on - strand at 5873.742 kb on + strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.751 kb on + strand at 5873.751 kb on + strand at 5873.751 kb on + strand at 5873.905 kb on - strand, within AO353_26815 at 5874.063 kb on + strand, within AO353_26815 at 5874.144 kb on + strand, within AO353_26815 at 5874.144 kb on + strand, within AO353_26815 at 5874.145 kb on - strand, within AO353_26815 at 5874.145 kb on - strand, within AO353_26815 at 5874.240 kb on + strand, within AO353_26815 at 5874.240 kb on + strand, within AO353_26815 at 5874.241 kb on - strand, within AO353_26815 at 5874.429 kb on + strand at 5874.450 kb on + strand at 5874.490 kb on + strand at 5874.491 kb on - strand at 5874.491 kb on - strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.541 kb on + strand at 5874.541 kb on + strand at 5874.541 kb on + strand at 5874.542 kb on - strand at 5874.542 kb on - strand at 5874.556 kb on + strand at 5874.557 kb on - strand at 5874.682 kb on + strand, within AO353_26820 at 5874.989 kb on + strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5875.397 kb on - strand, within AO353_26820 at 5875.397 kb on - strand, within AO353_26820
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 5,872,776 + AO353_26805 0.74 -0.2 5,872,782 - AO353_26805 0.74 +0.4 5,872,982 - AO353_26805 0.89 +0.6 5,872,982 - AO353_26805 0.89 +0.9 5,872,982 - AO353_26805 0.89 -1.1 5,872,982 - AO353_26805 0.89 -0.2 5,873,017 + -0.2 5,873,018 - -0.9 5,873,141 + +1.0 5,873,141 + -0.6 5,873,141 + -1.2 5,873,141 + -0.0 5,873,142 - +0.1 5,873,142 - -1.7 5,873,142 - -1.2 5,873,142 - +0.6 5,873,142 - -0.4 5,873,277 + AO353_26810 0.44 -0.7 5,873,305 + AO353_26810 0.53 -1.0 5,873,305 + AO353_26810 0.53 -0.4 5,873,401 + AO353_26810 0.83 -0.4 5,873,401 + AO353_26810 0.83 -1.9 5,873,401 + AO353_26810 0.83 +1.1 5,873,402 - AO353_26810 0.84 -0.5 5,873,402 - AO353_26810 0.84 +1.1 5,873,402 - -1.2 5,873,402 - AO353_26810 0.84 +0.0 5,873,434 + +0.0 5,873,542 + -0.6 5,873,542 + +0.1 5,873,542 + -1.2 5,873,542 + +0.1 5,873,543 - -3.1 5,873,543 - -0.9 5,873,543 - +0.2 5,873,556 - +0.9 5,873,574 + +3.0 5,873,580 - -0.2 5,873,586 + +0.6 5,873,681 - -0.4 5,873,701 + +0.7 5,873,702 - -0.9 5,873,742 + -0.6 5,873,743 - -0.2 5,873,743 - -0.9 5,873,743 - -0.3 5,873,743 - -0.9 5,873,751 + +0.5 5,873,751 + -1.4 5,873,751 + +0.1 5,873,905 - AO353_26815 0.20 +0.3 5,874,063 + AO353_26815 0.43 -1.2 5,874,144 + AO353_26815 0.55 +0.8 5,874,144 + AO353_26815 0.55 -0.7 5,874,145 - AO353_26815 0.55 -0.5 5,874,145 - AO353_26815 0.55 -1.3 5,874,240 + AO353_26815 0.69 -0.9 5,874,240 + AO353_26815 0.69 -0.1 5,874,241 - AO353_26815 0.69 -3.0 5,874,429 + +0.6 5,874,450 + +0.4 5,874,490 + +0.3 5,874,491 - -0.4 5,874,491 - -0.2 5,874,538 + +1.3 5,874,538 + -0.7 5,874,538 + -0.3 5,874,538 + -2.7 5,874,538 + -1.1 5,874,538 + -1.7 5,874,538 + +0.3 5,874,538 + -0.5 5,874,538 + +0.4 5,874,538 + +0.3 5,874,539 - +0.1 5,874,539 - +1.0 5,874,539 - +0.4 5,874,539 - +0.6 5,874,539 - -0.2 5,874,539 - +0.3 5,874,539 - +0.3 5,874,539 - -0.9 5,874,539 - +1.0 5,874,539 - -0.9 5,874,539 - +1.3 5,874,539 - +1.9 5,874,539 - +0.6 5,874,541 + +1.1 5,874,541 + +0.3 5,874,541 + -0.7 5,874,542 - -0.9 5,874,542 - +1.1 5,874,556 + -0.2 5,874,557 - -0.2 5,874,682 + AO353_26820 0.18 +0.7 5,874,989 + AO353_26820 0.40 +0.7 5,874,990 - AO353_26820 0.40 +1.1 5,874,990 - AO353_26820 0.40 -2.0 5,874,990 - AO353_26820 0.40 +1.0 5,875,397 - AO353_26820 0.69 -0.3 5,875,397 - AO353_26820 0.69 +1.1
Or see this region's nucleotide sequence