Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25265

Experiment: Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25255 and AO353_25260 are separated by 15 nucleotidesAO353_25260 and AO353_25265 are separated by 112 nucleotidesAO353_25265 and AO353_25270 are separated by 95 nucleotides AO353_25255: AO353_25255 - large subunit of pyruvate transporter (CstA) (from data), at 5,570,728 to 5,572,785 _25255 AO353_25260: AO353_25260 - hypothetical protein, at 5,572,801 to 5,572,998 _25260 AO353_25265: AO353_25265 - chemotaxis protein, at 5,573,111 to 5,574,730 _25265 AO353_25270: AO353_25270 - histidine kinase, at 5,574,826 to 5,575,266 _25270 Position (kb) 5573 5574 5575Strain fitness (log2 ratio) -2 -1 0 1 2at 5572.407 kb on + strand, within AO353_25255at 5572.445 kb on - strand, within AO353_25255at 5572.445 kb on - strand, within AO353_25255at 5572.445 kb on - strand, within AO353_25255at 5572.562 kb on - strand, within AO353_25255at 5572.562 kb on - strand, within AO353_25255at 5572.562 kb on - strand, within AO353_25255at 5572.784 kb on - strandat 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.930 kb on + strand, within AO353_25260at 5572.930 kb on + strand, within AO353_25260at 5572.931 kb on - strand, within AO353_25260at 5572.931 kb on - strand, within AO353_25260at 5573.113 kb on - strandat 5573.185 kb on + strandat 5573.185 kb on + strandat 5573.222 kb on - strandat 5573.389 kb on - strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.634 kb on - strand, within AO353_25265at 5574.192 kb on + strand, within AO353_25265at 5574.193 kb on - strand, within AO353_25265at 5574.193 kb on - strand, within AO353_25265at 5574.265 kb on + strand, within AO353_25265at 5574.265 kb on + strand, within AO353_25265at 5574.266 kb on - strand, within AO353_25265at 5574.266 kb on - strand, within AO353_25265at 5574.266 kb on - strand, within AO353_25265at 5574.268 kb on - strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.400 kb on + strand, within AO353_25265at 5574.400 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.651 kb on + strandat 5574.651 kb on + strandat 5574.651 kb on + strandat 5574.652 kb on - strandat 5574.652 kb on - strandat 5574.652 kb on - strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.704 kb on - strandat 5574.719 kb on + strandat 5574.720 kb on - strandat 5574.720 kb on - strandat 5574.751 kb on + strandat 5574.751 kb on + strandat 5574.751 kb on + strandat 5574.752 kb on - strandat 5574.788 kb on + strandat 5574.788 kb on + strandat 5574.788 kb on + strandat 5574.789 kb on - strandat 5574.795 kb on - strandat 5574.795 kb on - strandat 5574.795 kb on - strandat 5574.828 kb on - strandat 5574.828 kb on - strandat 5574.842 kb on + strandat 5574.843 kb on - strandat 5574.843 kb on - strandat 5575.117 kb on + strandat 5575.132 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.213 kb on + strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.609 kb on + strandat 5575.610 kb on - strandat 5575.611 kb on + strandat 5575.611 kb on + strandat 5575.611 kb on + strandat 5575.612 kb on - strandat 5575.676 kb on + strandat 5575.676 kb on + strandat 5575.676 kb on + strandat 5575.677 kb on - strandat 5575.677 kb on - strandat 5575.677 kb on - strandat 5575.677 kb on - strandat 5575.687 kb on - strandat 5575.696 kb on - strandat 5575.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
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5,572,407 + AO353_25255 0.82 -0.6
5,572,445 - AO353_25255 0.83 +0.9
5,572,445 - AO353_25255 0.83 +1.9
5,572,445 - AO353_25255 0.83 -0.5
5,572,562 - AO353_25255 0.89 +0.9
5,572,562 - AO353_25255 0.89 +0.1
5,572,562 - AO353_25255 0.89 -0.7
5,572,784 - +0.3
5,572,882 + AO353_25260 0.41 +0.8
5,572,882 + AO353_25260 0.41 +0.0
5,572,882 + AO353_25260 0.41 +1.0
5,572,882 + AO353_25260 0.41 +1.4
5,572,882 + AO353_25260 0.41 -0.2
5,572,930 + AO353_25260 0.65 -0.3
5,572,930 + AO353_25260 0.65 -1.1
5,572,931 - AO353_25260 0.66 +1.1
5,572,931 - AO353_25260 0.66 -0.6
5,573,113 - -2.1
5,573,185 + -0.2
5,573,185 + -0.2
5,573,222 - +0.1
5,573,389 - AO353_25265 0.17 +0.1
5,573,633 + AO353_25265 0.32 -0.9
5,573,633 + AO353_25265 0.32 +1.4
5,573,633 + AO353_25265 0.32 +0.4
5,573,633 + AO353_25265 0.32 +0.0
5,573,634 - AO353_25265 0.32 -0.6
5,574,192 + AO353_25265 0.67 -0.9
5,574,193 - AO353_25265 0.67 -1.2
5,574,193 - AO353_25265 0.67 -1.4
5,574,265 + AO353_25265 0.71 +0.1
5,574,265 + AO353_25265 0.71 +0.3
5,574,266 - AO353_25265 0.71 +1.0
5,574,266 - AO353_25265 0.71 -0.7
5,574,266 - AO353_25265 0.71 +0.6
5,574,268 - AO353_25265 0.71 -1.1
5,574,372 + AO353_25265 0.78 -1.2
5,574,372 + AO353_25265 0.78 -0.1
5,574,372 + AO353_25265 0.78 +1.6
5,574,372 + AO353_25265 0.78 +1.1
5,574,373 - AO353_25265 0.78 -2.3
5,574,373 - AO353_25265 0.78 +0.9
5,574,373 - AO353_25265 0.78 -0.9
5,574,373 - AO353_25265 0.78 +0.2
5,574,373 - AO353_25265 0.78 +0.1
5,574,400 + AO353_25265 0.80 -0.6
5,574,400 + AO353_25265 0.80 -2.0
5,574,402 + AO353_25265 0.80 +2.6
5,574,402 + AO353_25265 0.80 -1.0
5,574,402 + AO353_25265 0.80 +0.1
5,574,402 + AO353_25265 0.80 -0.5
5,574,402 + AO353_25265 0.80 -0.9
5,574,402 + AO353_25265 0.80 +1.1
5,574,402 + AO353_25265 0.80 -1.6
5,574,402 + AO353_25265 0.80 +0.1
5,574,402 + AO353_25265 0.80 +0.4
5,574,402 + AO353_25265 0.80 -1.9
5,574,402 + AO353_25265 0.80 +1.4
5,574,402 + AO353_25265 0.80 +1.0
5,574,403 - AO353_25265 0.80 -1.2
5,574,403 - AO353_25265 0.80 +0.4
5,574,403 - AO353_25265 0.80 -1.9
5,574,403 - AO353_25265 0.80 +0.2
5,574,403 - AO353_25265 0.80 +1.1
5,574,403 - AO353_25265 0.80 -2.2
5,574,403 - AO353_25265 0.80 -0.1
5,574,403 - AO353_25265 0.80 -0.5
5,574,403 - AO353_25265 0.80 -0.1
5,574,403 - AO353_25265 0.80 -0.4
5,574,403 - AO353_25265 0.80 -1.1
5,574,403 - AO353_25265 0.80 -0.8
5,574,651 + +0.4
5,574,651 + +0.1
5,574,651 + +1.2
5,574,652 - -0.5
5,574,652 - -0.5
5,574,652 - +1.6
5,574,703 + +0.7
5,574,703 + +0.2
5,574,703 + +1.3
5,574,703 + +0.2
5,574,703 + +0.5
5,574,704 - -0.1
5,574,719 + +0.6
5,574,720 - +0.6
5,574,720 - +1.0
5,574,751 + -1.9
5,574,751 + +0.5
5,574,751 + +0.9
5,574,752 - +0.1
5,574,788 + +1.0
5,574,788 + -0.9
5,574,788 + +0.4
5,574,789 - -0.0
5,574,795 - -0.0
5,574,795 - +0.5
5,574,795 - -0.5
5,574,828 - +0.1
5,574,828 - +0.3
5,574,842 + -1.5
5,574,843 - -1.0
5,574,843 - +1.1
5,575,117 + +2.1
5,575,132 + AO353_25270 0.69 -0.5
5,575,209 + AO353_25270 0.87 +1.6
5,575,209 + AO353_25270 0.87 -1.7
5,575,209 + AO353_25270 0.87 +0.8
5,575,209 + AO353_25270 0.87 -0.1
5,575,209 + AO353_25270 0.87 +0.2
5,575,209 + AO353_25270 0.87 -0.5
5,575,209 + AO353_25270 0.87 -0.6
5,575,210 - AO353_25270 0.87 -1.4
5,575,210 - AO353_25270 0.87 -0.1
5,575,210 - AO353_25270 0.87 -0.1
5,575,210 - AO353_25270 0.87 -0.5
5,575,213 + AO353_25270 0.88 +1.7
5,575,214 - AO353_25270 0.88 +0.4
5,575,214 - AO353_25270 0.88 +0.1
5,575,214 - AO353_25270 0.88 +1.7
5,575,214 - AO353_25270 0.88 +0.5
5,575,214 - AO353_25270 0.88 +1.5
5,575,609 + +1.1
5,575,610 - +0.5
5,575,611 + +0.1
5,575,611 + -0.8
5,575,611 + -2.5
5,575,612 - +0.3
5,575,676 + -1.1
5,575,676 + -0.7
5,575,676 + +2.1
5,575,677 - -0.1
5,575,677 - +0.9
5,575,677 - -0.9
5,575,677 - -0.9
5,575,687 - +0.3
5,575,696 - +1.9
5,575,696 - -1.1

Or see this region's nucleotide sequence