Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24840 and AO353_24845 are separated by 10 nucleotides AO353_24845 and AO353_24850 are separated by 60 nucleotides
AO353_24840: AO353_24840 - acyl-CoA synthetase, at 5,477,173 to 5,479,272
_24840
AO353_24845: AO353_24845 - decarboxylase, at 5,479,283 to 5,480,890
_24845
AO353_24850: AO353_24850 - aspartate aminotransferase, at 5,480,951 to 5,482,141
_24850
Position (kb) 5479
5480
5481 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5478.373 kb on + strand, within AO353_24840 at 5478.374 kb on - strand, within AO353_24840 at 5478.374 kb on - strand, within AO353_24840 at 5478.374 kb on - strand, within AO353_24840 at 5478.374 kb on - strand, within AO353_24840 at 5478.650 kb on + strand, within AO353_24840 at 5478.650 kb on + strand, within AO353_24840 at 5478.651 kb on - strand, within AO353_24840 at 5478.686 kb on + strand, within AO353_24840 at 5478.687 kb on - strand, within AO353_24840 at 5478.863 kb on - strand, within AO353_24840 at 5479.162 kb on + strand at 5479.162 kb on + strand at 5479.276 kb on + strand at 5479.276 kb on + strand at 5479.320 kb on + strand at 5479.337 kb on + strand at 5479.337 kb on + strand at 5479.338 kb on - strand at 5479.353 kb on + strand at 5479.354 kb on - strand at 5479.466 kb on + strand, within AO353_24845 at 5479.553 kb on + strand, within AO353_24845 at 5479.553 kb on + strand, within AO353_24845 at 5480.058 kb on + strand, within AO353_24845 at 5480.058 kb on + strand, within AO353_24845 at 5480.059 kb on - strand, within AO353_24845 at 5480.059 kb on - strand, within AO353_24845 at 5480.444 kb on + strand, within AO353_24845 at 5480.444 kb on + strand, within AO353_24845 at 5480.445 kb on - strand, within AO353_24845 at 5480.445 kb on - strand, within AO353_24845 at 5480.456 kb on + strand, within AO353_24845 at 5480.456 kb on + strand, within AO353_24845 at 5480.456 kb on + strand, within AO353_24845 at 5480.456 kb on + strand, within AO353_24845 at 5480.457 kb on - strand, within AO353_24845 at 5480.457 kb on - strand, within AO353_24845 at 5480.603 kb on + strand, within AO353_24845 at 5480.603 kb on + strand, within AO353_24845 at 5480.935 kb on - strand at 5480.977 kb on + strand at 5480.977 kb on + strand at 5480.978 kb on - strand at 5480.978 kb on - strand at 5481.326 kb on + strand, within AO353_24850 at 5481.326 kb on + strand, within AO353_24850 at 5481.327 kb on - strand, within AO353_24850 at 5481.327 kb on - strand, within AO353_24850 at 5481.335 kb on + strand, within AO353_24850 at 5481.336 kb on - strand, within AO353_24850 at 5481.336 kb on - strand, within AO353_24850 at 5481.336 kb on - strand, within AO353_24850 at 5481.336 kb on - strand, within AO353_24850 at 5481.336 kb on - strand, within AO353_24850 at 5481.336 kb on - strand, within AO353_24850 at 5481.569 kb on + strand, within AO353_24850 at 5481.570 kb on - strand, within AO353_24850 at 5481.752 kb on + strand, within AO353_24850 at 5481.752 kb on + strand, within AO353_24850 at 5481.752 kb on + strand, within AO353_24850 at 5481.752 kb on + strand, within AO353_24850 at 5481.753 kb on - strand, within AO353_24850 at 5481.753 kb on - strand, within AO353_24850
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 5,478,373 + AO353_24840 0.57 -0.0 5,478,374 - AO353_24840 0.57 -0.7 5,478,374 - AO353_24840 0.57 -0.0 5,478,374 - AO353_24840 0.57 -0.1 5,478,374 - AO353_24840 0.57 +0.0 5,478,650 + AO353_24840 0.70 -1.9 5,478,650 + AO353_24840 0.70 -1.4 5,478,651 - AO353_24840 0.70 -0.9 5,478,686 + AO353_24840 0.72 +0.3 5,478,687 - AO353_24840 0.72 -2.2 5,478,863 - AO353_24840 0.80 -1.0 5,479,162 + +1.6 5,479,162 + -1.0 5,479,276 + -1.4 5,479,276 + -1.9 5,479,320 + +2.3 5,479,337 + +0.1 5,479,337 + +0.1 5,479,338 - -1.4 5,479,353 + -1.7 5,479,354 - -0.6 5,479,466 + AO353_24845 0.11 +0.6 5,479,553 + AO353_24845 0.17 -1.1 5,479,553 + AO353_24845 0.17 +0.6 5,480,058 + AO353_24845 0.48 +0.7 5,480,058 + AO353_24845 0.48 +0.5 5,480,059 - AO353_24845 0.48 +0.9 5,480,059 - AO353_24845 0.48 -0.4 5,480,444 + AO353_24845 0.72 -0.7 5,480,444 + AO353_24845 0.72 -0.0 5,480,445 - AO353_24845 0.72 -1.6 5,480,445 - AO353_24845 0.72 -1.1 5,480,456 + AO353_24845 0.73 -2.3 5,480,456 + AO353_24845 0.73 +1.3 5,480,456 + AO353_24845 0.73 -0.3 5,480,456 + AO353_24845 0.73 -0.9 5,480,457 - AO353_24845 0.73 +0.1 5,480,457 - AO353_24845 0.73 -0.8 5,480,603 + AO353_24845 0.82 -1.8 5,480,603 + AO353_24845 0.82 -1.1 5,480,935 - -1.9 5,480,977 + +0.1 5,480,977 + -0.4 5,480,978 - -2.4 5,480,978 - -0.2 5,481,326 + AO353_24850 0.31 -1.4 5,481,326 + AO353_24850 0.31 +0.8 5,481,327 - AO353_24850 0.32 +0.1 5,481,327 - AO353_24850 0.32 +1.5 5,481,335 + AO353_24850 0.32 +0.0 5,481,336 - AO353_24850 0.32 +0.1 5,481,336 - AO353_24850 0.32 +0.2 5,481,336 - AO353_24850 0.32 +1.6 5,481,336 - AO353_24850 0.32 -1.7 5,481,336 - AO353_24850 0.32 -0.2 5,481,336 - AO353_24850 0.32 -0.4 5,481,569 + AO353_24850 0.52 -0.4 5,481,570 - AO353_24850 0.52 -1.9 5,481,752 + AO353_24850 0.67 +1.4 5,481,752 + AO353_24850 0.67 +1.0 5,481,752 + AO353_24850 0.67 +1.9 5,481,752 + AO353_24850 0.67 +0.1 5,481,753 - AO353_24850 0.67 -0.1 5,481,753 - AO353_24850 0.67 -0.7
Or see this region's nucleotide sequence