Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23995

Experiment: Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23990 and AO353_23995 are separated by 27 nucleotidesAO353_23995 and AO353_24000 are separated by 26 nucleotides AO353_23990: AO353_23990 - histidine decarboxylase, at 5,269,968 to 5,271,194 _23990 AO353_23995: AO353_23995 - 2,3-dihydroxybenzoate-AMP ligase, at 5,271,222 to 5,273,057 _23995 AO353_24000: AO353_24000 - isochorismate synthase, at 5,273,084 to 5,274,259 _24000 Position (kb) 5271 5272 5273 5274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5270.281 kb on + strand, within AO353_23990at 5270.281 kb on + strand, within AO353_23990at 5270.369 kb on + strand, within AO353_23990at 5270.370 kb on - strand, within AO353_23990at 5270.370 kb on - strand, within AO353_23990at 5270.416 kb on + strand, within AO353_23990at 5270.416 kb on + strand, within AO353_23990at 5270.416 kb on + strand, within AO353_23990at 5270.417 kb on - strand, within AO353_23990at 5270.417 kb on - strand, within AO353_23990at 5270.417 kb on - strand, within AO353_23990at 5270.417 kb on - strand, within AO353_23990at 5270.417 kb on - strand, within AO353_23990at 5270.605 kb on + strand, within AO353_23990at 5270.605 kb on + strand, within AO353_23990at 5270.605 kb on + strand, within AO353_23990at 5270.605 kb on + strand, within AO353_23990at 5270.606 kb on - strand, within AO353_23990at 5270.606 kb on - strand, within AO353_23990at 5270.606 kb on - strand, within AO353_23990at 5270.606 kb on - strand, within AO353_23990at 5270.606 kb on - strand, within AO353_23990at 5270.608 kb on + strand, within AO353_23990at 5270.608 kb on + strand, within AO353_23990at 5270.608 kb on + strand, within AO353_23990at 5270.609 kb on - strand, within AO353_23990at 5270.609 kb on - strand, within AO353_23990at 5270.609 kb on - strand, within AO353_23990at 5270.609 kb on - strand, within AO353_23990at 5270.733 kb on + strand, within AO353_23990at 5270.733 kb on + strand, within AO353_23990at 5270.834 kb on - strand, within AO353_23990at 5270.834 kb on - strand, within AO353_23990at 5270.851 kb on + strand, within AO353_23990at 5270.852 kb on - strand, within AO353_23990at 5270.855 kb on - strand, within AO353_23990at 5270.855 kb on - strand, within AO353_23990at 5270.855 kb on - strand, within AO353_23990at 5270.855 kb on - strand, within AO353_23990at 5270.890 kb on + strand, within AO353_23990at 5270.890 kb on + strand, within AO353_23990at 5270.890 kb on + strand, within AO353_23990at 5270.891 kb on - strand, within AO353_23990at 5270.932 kb on + strand, within AO353_23990at 5270.933 kb on - strand, within AO353_23990at 5270.977 kb on + strand, within AO353_23990at 5270.977 kb on + strand, within AO353_23990at 5270.977 kb on + strand, within AO353_23990at 5270.978 kb on - strand, within AO353_23990at 5270.978 kb on - strand, within AO353_23990at 5271.019 kb on + strand, within AO353_23990at 5271.019 kb on + strand, within AO353_23990at 5271.019 kb on + strand, within AO353_23990at 5271.019 kb on + strand, within AO353_23990at 5271.019 kb on + strand, within AO353_23990at 5271.020 kb on - strand, within AO353_23990at 5271.020 kb on - strand, within AO353_23990at 5271.020 kb on - strand, within AO353_23990at 5271.020 kb on - strand, within AO353_23990at 5271.028 kb on + strand, within AO353_23990at 5271.028 kb on + strand, within AO353_23990at 5271.088 kb on + strandat 5271.127 kb on + strandat 5271.127 kb on + strandat 5271.127 kb on + strandat 5271.128 kb on - strandat 5271.194 kb on + strandat 5271.194 kb on + strandat 5271.194 kb on + strandat 5271.194 kb on + strandat 5271.195 kb on - strandat 5271.195 kb on - strandat 5271.195 kb on - strandat 5271.195 kb on - strandat 5271.198 kb on + strandat 5271.198 kb on + strandat 5271.198 kb on + strandat 5271.198 kb on + strandat 5271.198 kb on + strandat 5271.199 kb on - strandat 5271.199 kb on - strandat 5271.199 kb on - strandat 5271.247 kb on - strandat 5271.365 kb on - strandat 5271.420 kb on + strand, within AO353_23995at 5271.432 kb on + strand, within AO353_23995at 5271.433 kb on - strand, within AO353_23995at 5271.471 kb on + strand, within AO353_23995at 5271.471 kb on + strand, within AO353_23995at 5271.471 kb on + strand, within AO353_23995at 5271.471 kb on + strand, within AO353_23995at 5271.471 kb on + strand, within AO353_23995at 5271.472 kb on - strand, within AO353_23995at 5271.472 kb on - strand, within AO353_23995at 5271.547 kb on + strand, within AO353_23995at 5271.548 kb on - strand, within AO353_23995at 5271.817 kb on + strand, within AO353_23995at 5271.817 kb on + strand, within AO353_23995at 5271.817 kb on + strand, within AO353_23995at 5271.817 kb on + strand, within AO353_23995at 5271.818 kb on - strand, within AO353_23995at 5271.818 kb on - strand, within AO353_23995at 5271.818 kb on - strand, within AO353_23995at 5271.820 kb on + strand, within AO353_23995at 5271.820 kb on + strand, within AO353_23995at 5271.820 kb on + strand, within AO353_23995at 5271.820 kb on + strand, within AO353_23995at 5271.820 kb on + strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.821 kb on - strand, within AO353_23995at 5271.823 kb on + strand, within AO353_23995at 5271.824 kb on - strand, within AO353_23995at 5271.824 kb on - strand, within AO353_23995at 5271.886 kb on + strand, within AO353_23995at 5271.886 kb on + strand, within AO353_23995at 5271.951 kb on + strand, within AO353_23995at 5271.951 kb on + strand, within AO353_23995at 5272.030 kb on + strandat 5272.031 kb on - strand, within AO353_23995at 5272.031 kb on - strand, within AO353_23995at 5272.031 kb on - strand, within AO353_23995at 5272.031 kb on - strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.639 kb on + strand, within AO353_23995at 5272.639 kb on + strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.708 kb on + strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.792 kb on + strand, within AO353_23995at 5272.792 kb on + strand, within AO353_23995at 5272.792 kb on + strand, within AO353_23995at 5272.793 kb on - strand, within AO353_23995at 5272.805 kb on + strand, within AO353_23995at 5272.805 kb on + strand, within AO353_23995at 5272.806 kb on - strand, within AO353_23995at 5272.900 kb on + strandat 5272.900 kb on + strandat 5272.900 kb on + strandat 5272.901 kb on - strandat 5272.901 kb on - strandat 5272.904 kb on + strandat 5272.904 kb on + strandat 5272.904 kb on + strandat 5272.904 kb on + strandat 5272.905 kb on - strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.050 kb on - strandat 5273.050 kb on - strandat 5273.050 kb on - strandat 5273.051 kb on + strandat 5273.051 kb on + strandat 5273.083 kb on - strandat 5273.083 kb on - strandat 5273.083 kb on - strandat 5273.085 kb on + strandat 5273.085 kb on + strandat 5273.086 kb on - strandat 5273.713 kb on + strand, within AO353_24000at 5273.713 kb on + strand, within AO353_24000at 5273.713 kb on + strand, within AO353_24000at 5273.713 kb on + strand, within AO353_24000at 5273.714 kb on - strand, within AO353_24000at 5273.717 kb on + strandat 5273.717 kb on + strand, within AO353_24000at 5273.758 kb on + strand, within AO353_24000at 5273.758 kb on + strand, within AO353_24000at 5273.898 kb on - strand, within AO353_24000at 5273.946 kb on - strand, within AO353_24000at 5273.946 kb on - strand, within AO353_24000at 5273.988 kb on + strand, within AO353_24000at 5273.988 kb on + strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
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5,270,281 + AO353_23990 0.26 -1.2
5,270,281 + AO353_23990 0.26 +0.9
5,270,369 + AO353_23990 0.33 +0.2
5,270,370 - AO353_23990 0.33 -0.2
5,270,370 - AO353_23990 0.33 -1.6
5,270,416 + AO353_23990 0.37 +0.3
5,270,416 + AO353_23990 0.37 -0.4
5,270,416 + AO353_23990 0.37 -0.8
5,270,417 - AO353_23990 0.37 -2.5
5,270,417 - AO353_23990 0.37 +0.7
5,270,417 - AO353_23990 0.37 -0.4
5,270,417 - AO353_23990 0.37 -0.1
5,270,417 - AO353_23990 0.37 +1.9
5,270,605 + AO353_23990 0.52 -0.8
5,270,605 + AO353_23990 0.52 +0.2
5,270,605 + AO353_23990 0.52 -0.8
5,270,605 + AO353_23990 0.52 -0.7
5,270,606 - AO353_23990 0.52 +0.2
5,270,606 - AO353_23990 0.52 -1.5
5,270,606 - AO353_23990 0.52 +0.2
5,270,606 - AO353_23990 0.52 -1.5
5,270,606 - AO353_23990 0.52 +0.5
5,270,608 + AO353_23990 0.52 -0.7
5,270,608 + AO353_23990 0.52 +0.4
5,270,608 + AO353_23990 0.52 +0.6
5,270,609 - AO353_23990 0.52 +0.2
5,270,609 - AO353_23990 0.52 +0.1
5,270,609 - AO353_23990 0.52 -0.7
5,270,609 - AO353_23990 0.52 -1.4
5,270,733 + AO353_23990 0.62 +0.0
5,270,733 + AO353_23990 0.62 +0.9
5,270,834 - AO353_23990 0.71 +0.2
5,270,834 - AO353_23990 0.71 +0.5
5,270,851 + AO353_23990 0.72 +0.6
5,270,852 - AO353_23990 0.72 +1.2
5,270,855 - AO353_23990 0.72 +1.2
5,270,855 - AO353_23990 0.72 -0.8
5,270,855 - AO353_23990 0.72 -0.6
5,270,855 - AO353_23990 0.72 -1.4
5,270,890 + AO353_23990 0.75 -0.1
5,270,890 + AO353_23990 0.75 -0.8
5,270,890 + AO353_23990 0.75 +0.6
5,270,891 - AO353_23990 0.75 +0.6
5,270,932 + AO353_23990 0.79 -0.4
5,270,933 - AO353_23990 0.79 +0.1
5,270,977 + AO353_23990 0.82 -0.4
5,270,977 + AO353_23990 0.82 +0.9
5,270,977 + AO353_23990 0.82 +2.2
5,270,978 - AO353_23990 0.82 +1.2
5,270,978 - AO353_23990 0.82 +0.4
5,271,019 + AO353_23990 0.86 +1.2
5,271,019 + AO353_23990 0.86 -1.0
5,271,019 + AO353_23990 0.86 +0.4
5,271,019 + AO353_23990 0.86 -1.2
5,271,019 + AO353_23990 0.86 +1.5
5,271,020 - AO353_23990 0.86 +1.5
5,271,020 - AO353_23990 0.86 +1.2
5,271,020 - AO353_23990 0.86 +0.2
5,271,020 - AO353_23990 0.86 +0.7
5,271,028 + AO353_23990 0.86 +0.8
5,271,028 + AO353_23990 0.86 +1.7
5,271,088 + +1.2
5,271,127 + +0.5
5,271,127 + +0.4
5,271,127 + -0.3
5,271,128 - -0.2
5,271,194 + -0.4
5,271,194 + +0.2
5,271,194 + -1.3
5,271,194 + -1.8
5,271,195 - -2.6
5,271,195 - -0.3
5,271,195 - -0.8
5,271,195 - -2.3
5,271,198 + -0.2
5,271,198 + -2.0
5,271,198 + -2.7
5,271,198 + +0.2
5,271,198 + -0.5
5,271,199 - -0.1
5,271,199 - -0.6
5,271,199 - -1.9
5,271,247 - +1.2
5,271,365 - -0.4
5,271,420 + AO353_23995 0.11 +1.8
5,271,432 + AO353_23995 0.11 -0.0
5,271,433 - AO353_23995 0.11 +1.9
5,271,471 + AO353_23995 0.14 +0.4
5,271,471 + AO353_23995 0.14 +0.0
5,271,471 + AO353_23995 0.14 -1.6
5,271,471 + AO353_23995 0.14 +0.4
5,271,471 + AO353_23995 0.14 -0.3
5,271,472 - AO353_23995 0.14 +0.2
5,271,472 - AO353_23995 0.14 +0.1
5,271,547 + AO353_23995 0.18 -0.9
5,271,548 - AO353_23995 0.18 +1.2
5,271,817 + AO353_23995 0.32 -1.6
5,271,817 + AO353_23995 0.32 -0.6
5,271,817 + AO353_23995 0.32 -0.6
5,271,817 + AO353_23995 0.32 +0.2
5,271,818 - AO353_23995 0.32 -0.7
5,271,818 - AO353_23995 0.32 +0.6
5,271,818 - AO353_23995 0.32 +1.3
5,271,820 + AO353_23995 0.33 -1.2
5,271,820 + AO353_23995 0.33 -0.0
5,271,820 + AO353_23995 0.33 -0.1
5,271,820 + AO353_23995 0.33 -0.2
5,271,820 + AO353_23995 0.33 -0.4
5,271,821 - AO353_23995 0.33 +1.2
5,271,821 - AO353_23995 0.33 +1.3
5,271,821 - AO353_23995 0.33 +3.0
5,271,821 - AO353_23995 0.33 +0.0
5,271,821 - AO353_23995 0.33 +1.0
5,271,821 - AO353_23995 0.33 -0.3
5,271,821 - AO353_23995 0.33 -0.4
5,271,821 - AO353_23995 0.33 -0.3
5,271,821 - AO353_23995 0.33 -0.6
5,271,821 - AO353_23995 0.33 +1.5
5,271,823 + AO353_23995 0.33 +1.1
5,271,824 - AO353_23995 0.33 -0.3
5,271,824 - AO353_23995 0.33 +0.5
5,271,886 + AO353_23995 0.36 -0.3
5,271,886 + AO353_23995 0.36 +1.0
5,271,951 + AO353_23995 0.40 +0.5
5,271,951 + AO353_23995 0.40 +0.4
5,272,030 + +0.2
5,272,031 - AO353_23995 0.44 -3.0
5,272,031 - AO353_23995 0.44 +0.4
5,272,031 - AO353_23995 0.44 +0.1
5,272,031 - AO353_23995 0.44 -0.4
5,272,395 + AO353_23995 0.64 -0.6
5,272,395 + AO353_23995 0.64 -0.0
5,272,395 + AO353_23995 0.64 -1.1
5,272,395 + AO353_23995 0.64 -0.3
5,272,396 - AO353_23995 0.64 -0.8
5,272,396 - AO353_23995 0.64 -0.0
5,272,396 - AO353_23995 0.64 -1.6
5,272,396 - AO353_23995 0.64 +1.6
5,272,420 + AO353_23995 0.65 -0.3
5,272,420 + AO353_23995 0.65 +0.8
5,272,420 + AO353_23995 0.65 -2.3
5,272,420 + AO353_23995 0.65 +0.1
5,272,420 + AO353_23995 0.65 +0.0
5,272,421 - AO353_23995 0.65 -0.1
5,272,421 - AO353_23995 0.65 +0.8
5,272,421 - AO353_23995 0.65 -1.0
5,272,421 - AO353_23995 0.65 -0.2
5,272,639 + AO353_23995 0.77 -0.2
5,272,639 + AO353_23995 0.77 -1.0
5,272,640 - AO353_23995 0.77 -0.8
5,272,640 - AO353_23995 0.77 -0.1
5,272,640 - AO353_23995 0.77 -2.4
5,272,640 - AO353_23995 0.77 +0.9
5,272,640 - AO353_23995 0.77 -0.0
5,272,708 + AO353_23995 0.81 +0.4
5,272,739 - AO353_23995 0.83 -0.1
5,272,739 - AO353_23995 0.83 -0.5
5,272,739 - AO353_23995 0.83 +1.2
5,272,739 - AO353_23995 0.83 -1.1
5,272,792 + AO353_23995 0.86 -0.4
5,272,792 + AO353_23995 0.86 -1.0
5,272,792 + AO353_23995 0.86 -0.9
5,272,793 - AO353_23995 0.86 +0.5
5,272,805 + AO353_23995 0.86 +0.1
5,272,805 + AO353_23995 0.86 -2.0
5,272,806 - AO353_23995 0.86 +0.2
5,272,900 + +0.2
5,272,900 + -0.8
5,272,900 + -2.1
5,272,901 - -0.0
5,272,901 - -1.0
5,272,904 + +0.5
5,272,904 + +2.2
5,272,904 + -0.2
5,272,904 + +1.3
5,272,905 - +1.5
5,273,049 + +1.0
5,273,049 + +0.7
5,273,049 + +0.3
5,273,049 + -0.1
5,273,049 + +0.6
5,273,049 + -0.7
5,273,049 + +0.7
5,273,050 - -0.2
5,273,050 - -0.6
5,273,050 - +0.9
5,273,051 + -1.4
5,273,051 + +1.2
5,273,083 - -0.8
5,273,083 - -0.4
5,273,083 - +0.2
5,273,085 + -0.1
5,273,085 + -0.0
5,273,086 - +0.4
5,273,713 + AO353_24000 0.53 -0.8
5,273,713 + AO353_24000 0.53 +0.2
5,273,713 + AO353_24000 0.53 +0.0
5,273,713 + AO353_24000 0.53 +1.8
5,273,714 - AO353_24000 0.54 -0.9
5,273,717 + +0.2
5,273,717 + AO353_24000 0.54 +0.8
5,273,758 + AO353_24000 0.57 -2.1
5,273,758 + AO353_24000 0.57 +0.7
5,273,898 - AO353_24000 0.69 -0.2
5,273,946 - AO353_24000 0.73 +0.4
5,273,946 - AO353_24000 0.73 +0.2
5,273,988 + AO353_24000 0.77 -1.1
5,273,988 + AO353_24000 0.77 +1.6
5,273,989 - AO353_24000 0.77 -0.3
5,273,989 - AO353_24000 0.77 -0.1
5,273,989 - AO353_24000 0.77 -0.8
5,273,989 - AO353_24000 0.77 -2.5

Or see this region's nucleotide sequence