Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23435 and AO353_23440 are separated by 1 nucleotides AO353_23440 and AO353_23445 are separated by 36 nucleotides AO353_23445 and AO353_23450 are separated by 114 nucleotides
AO353_23435: AO353_23435 - twin-arginine translocation pathway signal protein, at 5,132,711 to 5,134,879
_23435
AO353_23440: AO353_23440 - hypothetical protein, at 5,134,881 to 5,135,459
_23440
AO353_23445: AO353_23445 - glyoxalase, at 5,135,496 to 5,135,921
_23445
AO353_23450: AO353_23450 - LysR family transcriptional regulator, at 5,136,036 to 5,136,890
_23450
Position (kb) 5134
5135
5136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5133.881 kb on - strand, within AO353_23435 at 5134.008 kb on + strand, within AO353_23435 at 5134.008 kb on + strand, within AO353_23435 at 5134.008 kb on + strand, within AO353_23435 at 5134.008 kb on + strand, within AO353_23435 at 5134.008 kb on + strand, within AO353_23435 at 5134.008 kb on + strand, within AO353_23435 at 5134.009 kb on - strand, within AO353_23435 at 5134.009 kb on - strand, within AO353_23435 at 5134.009 kb on - strand, within AO353_23435 at 5134.019 kb on + strand, within AO353_23435 at 5134.020 kb on - strand, within AO353_23435 at 5134.022 kb on + strand, within AO353_23435 at 5134.023 kb on - strand, within AO353_23435 at 5134.095 kb on + strand, within AO353_23435 at 5134.095 kb on + strand, within AO353_23435 at 5134.096 kb on - strand, within AO353_23435 at 5134.096 kb on - strand, within AO353_23435 at 5134.096 kb on - strand, within AO353_23435 at 5134.096 kb on - strand, within AO353_23435 at 5134.096 kb on - strand, within AO353_23435 at 5134.196 kb on + strand, within AO353_23435 at 5134.197 kb on - strand, within AO353_23435 at 5134.197 kb on - strand, within AO353_23435 at 5134.197 kb on - strand, within AO353_23435 at 5134.197 kb on - strand, within AO353_23435 at 5134.197 kb on - strand, within AO353_23435 at 5134.198 kb on + strand, within AO353_23435 at 5134.198 kb on + strand, within AO353_23435 at 5134.490 kb on + strand, within AO353_23435 at 5134.490 kb on + strand, within AO353_23435 at 5134.490 kb on + strand, within AO353_23435 at 5134.688 kb on + strand at 5134.688 kb on + strand at 5134.689 kb on - strand at 5134.689 kb on - strand at 5134.789 kb on - strand at 5134.932 kb on + strand at 5134.932 kb on + strand at 5134.933 kb on - strand at 5134.933 kb on - strand at 5135.027 kb on + strand, within AO353_23440 at 5135.164 kb on - strand, within AO353_23440 at 5135.164 kb on - strand, within AO353_23440 at 5135.219 kb on + strand, within AO353_23440 at 5135.219 kb on + strand, within AO353_23440 at 5135.393 kb on + strand, within AO353_23440 at 5135.458 kb on - strand at 5135.497 kb on + strand at 5135.497 kb on + strand at 5135.498 kb on - strand at 5135.498 kb on - strand at 5135.498 kb on - strand at 5135.858 kb on - strand, within AO353_23445 at 5135.884 kb on + strand at 5135.884 kb on + strand at 5135.884 kb on + strand at 5135.884 kb on + strand at 5135.884 kb on + strand at 5135.884 kb on + strand at 5135.884 kb on + strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5135.885 kb on - strand at 5136.076 kb on - strand at 5136.358 kb on + strand, within AO353_23450 at 5136.358 kb on + strand, within AO353_23450 at 5136.359 kb on - strand, within AO353_23450
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 5,133,881 - AO353_23435 0.54 +0.8 5,134,008 + AO353_23435 0.60 +1.2 5,134,008 + AO353_23435 0.60 -1.3 5,134,008 + AO353_23435 0.60 +0.6 5,134,008 + AO353_23435 0.60 +0.8 5,134,008 + AO353_23435 0.60 -0.0 5,134,008 + AO353_23435 0.60 -0.8 5,134,009 - AO353_23435 0.60 +0.6 5,134,009 - AO353_23435 0.60 +1.4 5,134,009 - AO353_23435 0.60 +0.7 5,134,019 + AO353_23435 0.60 +1.9 5,134,020 - AO353_23435 0.60 -1.2 5,134,022 + AO353_23435 0.60 -0.3 5,134,023 - AO353_23435 0.60 +0.2 5,134,095 + AO353_23435 0.64 -0.2 5,134,095 + AO353_23435 0.64 -0.1 5,134,096 - AO353_23435 0.64 -0.1 5,134,096 - AO353_23435 0.64 +1.4 5,134,096 - AO353_23435 0.64 +0.4 5,134,096 - AO353_23435 0.64 +0.4 5,134,096 - AO353_23435 0.64 -0.3 5,134,196 + AO353_23435 0.68 -0.3 5,134,197 - AO353_23435 0.69 +0.2 5,134,197 - AO353_23435 0.69 -0.6 5,134,197 - AO353_23435 0.69 -0.2 5,134,197 - AO353_23435 0.69 +0.4 5,134,197 - AO353_23435 0.69 +0.6 5,134,198 + AO353_23435 0.69 -1.3 5,134,198 + AO353_23435 0.69 +0.0 5,134,490 + AO353_23435 0.82 +1.7 5,134,490 + AO353_23435 0.82 +0.2 5,134,490 + AO353_23435 0.82 +3.2 5,134,688 + +1.3 5,134,688 + +1.4 5,134,689 - +0.2 5,134,689 - -0.4 5,134,789 - -1.4 5,134,932 + -0.4 5,134,932 + -0.6 5,134,933 - -0.3 5,134,933 - +0.9 5,135,027 + AO353_23440 0.25 +0.6 5,135,164 - AO353_23440 0.49 -0.1 5,135,164 - AO353_23440 0.49 -0.8 5,135,219 + AO353_23440 0.58 -0.8 5,135,219 + AO353_23440 0.58 -1.6 5,135,393 + AO353_23440 0.88 +0.4 5,135,458 - -1.0 5,135,497 + +0.0 5,135,497 + +0.6 5,135,498 - +0.3 5,135,498 - -0.4 5,135,498 - -0.6 5,135,858 - AO353_23445 0.85 -0.6 5,135,884 + +0.5 5,135,884 + -0.8 5,135,884 + -0.7 5,135,884 + -0.4 5,135,884 + +0.3 5,135,884 + -2.2 5,135,884 + -0.7 5,135,885 - +0.3 5,135,885 - -2.3 5,135,885 - -1.4 5,135,885 - -0.0 5,135,885 - +1.7 5,135,885 - +1.4 5,135,885 - -0.3 5,135,885 - -0.3 5,135,885 - +0.4 5,135,885 - -1.0 5,136,076 - -0.1 5,136,358 + AO353_23450 0.38 +0.7 5,136,358 + AO353_23450 0.38 +1.2 5,136,359 - AO353_23450 0.38 +2.4
Or see this region's nucleotide sequence