Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23135 and AO353_23140 are separated by 10 nucleotides AO353_23140 and AO353_23145 are separated by 10 nucleotides
AO353_23135: AO353_23135 - aldehyde dehydrogenase, at 5,076,595 to 5,078,091
_23135
AO353_23140: AO353_23140 - aspartate dehydrogenase, at 5,078,102 to 5,078,905
_23140
AO353_23145: AO353_23145 - hypothetical protein, at 5,078,916 to 5,080,598
_23145
Position (kb) 5078
5079 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5077.199 kb on + strand, within AO353_23135 at 5077.200 kb on - strand, within AO353_23135 at 5077.237 kb on - strand, within AO353_23135 at 5077.237 kb on - strand, within AO353_23135 at 5077.268 kb on + strand, within AO353_23135 at 5077.330 kb on - strand, within AO353_23135 at 5077.381 kb on + strand, within AO353_23135 at 5077.381 kb on + strand, within AO353_23135 at 5077.381 kb on + strand, within AO353_23135 at 5077.382 kb on - strand, within AO353_23135 at 5077.382 kb on - strand, within AO353_23135 at 5077.382 kb on - strand, within AO353_23135 at 5077.399 kb on - strand, within AO353_23135 at 5077.399 kb on - strand, within AO353_23135 at 5077.674 kb on - strand, within AO353_23135 at 5077.674 kb on - strand, within AO353_23135 at 5077.871 kb on + strand, within AO353_23135 at 5078.024 kb on + strand at 5078.072 kb on - strand at 5078.103 kb on + strand at 5078.152 kb on - strand at 5078.152 kb on - strand at 5078.152 kb on - strand at 5078.152 kb on - strand at 5078.476 kb on - strand, within AO353_23140 at 5078.476 kb on - strand, within AO353_23140 at 5078.817 kb on + strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.818 kb on - strand, within AO353_23140 at 5078.896 kb on + strand at 5078.896 kb on + strand at 5078.897 kb on - strand at 5078.897 kb on - strand at 5078.897 kb on - strand at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.139 kb on + strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.140 kb on - strand, within AO353_23145 at 5079.157 kb on + strand, within AO353_23145 at 5079.157 kb on + strand, within AO353_23145 at 5079.157 kb on + strand, within AO353_23145 at 5079.673 kb on + strand, within AO353_23145 at 5079.673 kb on + strand, within AO353_23145 at 5079.674 kb on - strand, within AO353_23145 at 5079.717 kb on - strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.739 kb on + strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145 at 5079.740 kb on - strand, within AO353_23145
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 5,077,199 + AO353_23135 0.40 +0.1 5,077,200 - AO353_23135 0.40 -0.3 5,077,237 - AO353_23135 0.43 -0.4 5,077,237 - AO353_23135 0.43 +0.5 5,077,268 + AO353_23135 0.45 -0.5 5,077,330 - AO353_23135 0.49 +1.4 5,077,381 + AO353_23135 0.53 -0.8 5,077,381 + AO353_23135 0.53 +1.2 5,077,381 + AO353_23135 0.53 -0.9 5,077,382 - AO353_23135 0.53 +0.8 5,077,382 - AO353_23135 0.53 +3.4 5,077,382 - AO353_23135 0.53 -1.0 5,077,399 - AO353_23135 0.54 +0.4 5,077,399 - AO353_23135 0.54 +0.2 5,077,674 - AO353_23135 0.72 -0.2 5,077,674 - AO353_23135 0.72 +1.2 5,077,871 + AO353_23135 0.85 -0.2 5,078,024 + -0.8 5,078,072 - -0.2 5,078,103 + +0.7 5,078,152 - -1.8 5,078,152 - -1.2 5,078,152 - -1.2 5,078,152 - +0.6 5,078,476 - AO353_23140 0.47 -0.7 5,078,476 - AO353_23140 0.47 -1.8 5,078,817 + AO353_23140 0.89 +0.7 5,078,818 - AO353_23140 0.89 -2.0 5,078,818 - AO353_23140 0.89 -1.3 5,078,818 - AO353_23140 0.89 -0.5 5,078,818 - AO353_23140 0.89 +0.0 5,078,818 - AO353_23140 0.89 -1.2 5,078,896 + +0.2 5,078,896 + +1.3 5,078,897 - +1.7 5,078,897 - -1.2 5,078,897 - +0.4 5,079,139 + AO353_23145 0.13 -1.8 5,079,139 + AO353_23145 0.13 +0.7 5,079,139 + AO353_23145 0.13 +0.8 5,079,139 + AO353_23145 0.13 -0.7 5,079,139 + AO353_23145 0.13 +0.9 5,079,139 + AO353_23145 0.13 +0.6 5,079,139 + AO353_23145 0.13 +2.5 5,079,140 - AO353_23145 0.13 +1.4 5,079,140 - AO353_23145 0.13 -0.0 5,079,140 - AO353_23145 0.13 +0.1 5,079,140 - AO353_23145 0.13 +0.6 5,079,157 + AO353_23145 0.14 -0.8 5,079,157 + AO353_23145 0.14 -0.1 5,079,157 + AO353_23145 0.14 -0.9 5,079,673 + AO353_23145 0.45 +0.5 5,079,673 + AO353_23145 0.45 -1.0 5,079,674 - AO353_23145 0.45 +0.8 5,079,717 - AO353_23145 0.48 +0.4 5,079,739 + AO353_23145 0.49 -2.7 5,079,739 + AO353_23145 0.49 +0.7 5,079,739 + AO353_23145 0.49 +0.0 5,079,739 + AO353_23145 0.49 -0.2 5,079,739 + AO353_23145 0.49 -0.2 5,079,740 - AO353_23145 0.49 +0.2 5,079,740 - AO353_23145 0.49 -0.4 5,079,740 - AO353_23145 0.49 -0.7 5,079,740 - AO353_23145 0.49 -0.4 5,079,740 - AO353_23145 0.49 -1.5
Or see this region's nucleotide sequence