Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20135

Experiment: Vancomycin 1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 1 mg/ml
4,426,942	+				+0.7
4,426,942	+				-0.7
4,426,942	+				-0.3
4,426,942	+				+0.9
4,426,942	+				-1.7
4,426,942	+				+2.0
4,426,943	-				+0.3
4,426,943	-				-1.3
4,426,943	-				-0.0
4,426,943	-				-1.1
4,426,943	-				-2.0
4,426,943	-				-0.7
4,426,943	-				+0.1
4,426,943	-				+0.8
4,426,943	-				-1.3
4,426,943	-				-0.4
4,426,943	-				+0.5
4,426,945	+				+0.8
4,427,003	+				-0.1
4,427,003	+				+1.5
4,427,003	+				-0.9
4,427,017	+				+0.1
4,427,018	-				-0.9
4,427,018	-				-0.9
4,427,108	-				-2.1
4,427,108	-				-1.0
4,427,108	-				-0.1
4,427,108	-				-0.2
4,427,109	+				+0.0
4,427,110	-				-1.4
4,427,110	-				-2.6
4,427,110	-				+0.3
4,427,110	-				-1.1
4,427,110	-				-0.1
4,427,110	-				-2.3
4,427,110	-				+0.5
4,427,118	+				-0.8
4,427,118	+				-2.2
4,427,119	-				+0.7
4,427,119	-				-1.3
4,427,119	-				-0.5
4,427,258	+		AO353_20130	0.13	+0.3
4,427,258	+		AO353_20130	0.13	-1.4
4,427,258	+		AO353_20130	0.13	+1.0
4,427,258	+		AO353_20130	0.13	+1.0
4,427,258	+		AO353_20130	0.13	+0.1
4,427,258	+		AO353_20130	0.13	-1.5
4,427,258	+		AO353_20130	0.13	-0.3
4,427,258	+		AO353_20130	0.13	-1.1
4,427,258	+		AO353_20130	0.13	-1.8
4,427,258	+		AO353_20130	0.13	-1.3
4,427,258	+		AO353_20130	0.13	+0.8
4,427,258	+		AO353_20130	0.13	-2.7
4,427,258	+		AO353_20130	0.13	-0.5
4,427,258	+		AO353_20130	0.13	-0.8
4,427,258	+		AO353_20130	0.13	-0.1
4,427,259	-		AO353_20130	0.13	-0.5
4,427,259	-		AO353_20130	0.13	-0.5
4,427,259	-		AO353_20130	0.13	-0.6
4,427,259	-		AO353_20130	0.13	-1.7
4,427,314	+		AO353_20130	0.21	-1.5
4,427,315	-		AO353_20130	0.21	+0.4
4,427,315	-		AO353_20130	0.21	-0.9
4,427,330	-		AO353_20130	0.23	-0.2
4,427,330	-				+1.7
4,427,470	+		AO353_20130	0.44	-0.9
4,427,470	+		AO353_20130	0.44	-0.2
4,427,590	+		AO353_20130	0.62	-0.5
4,427,591	-		AO353_20130	0.62	-0.7
4,427,591	-		AO353_20130	0.62	-1.3
4,427,933	+				+0.9
4,427,933	+				-0.3
4,427,933	+				+0.0
4,427,933	+				+1.3
4,427,933	+				-1.5
4,427,934	-				+2.7
4,427,934	-				-2.6
4,427,934	-				-0.1
4,427,958	+				-0.7
4,427,993	+				-1.1
4,427,993	+				-0.1
4,427,993	+				+1.3
4,427,993	+				+1.3
4,427,993	+				+1.8
4,427,994	-				+0.7
4,427,994	-				-0.4
4,428,077	+		AO353_20135	0.15	+0.1
4,428,077	+		AO353_20135	0.15	+1.4
4,428,077	+		AO353_20135	0.15	+0.8
4,428,077	+		AO353_20135	0.15	-0.6
4,428,077	+		AO353_20135	0.15	-1.5
4,428,078	-		AO353_20135	0.15	+0.7
4,428,078	-		AO353_20135	0.15	-1.5
4,428,078	-		AO353_20135	0.15	-3.0
4,428,078	-		AO353_20135	0.15	-2.5
4,428,165	+		AO353_20135	0.25	-1.7
4,428,165	+		AO353_20135	0.25	+0.8
4,428,166	-		AO353_20135	0.25	+0.1
4,428,242	+		AO353_20135	0.33	-0.2
4,428,242	+		AO353_20135	0.33	-0.6
4,428,242	+		AO353_20135	0.33	+0.8
4,428,242	+		AO353_20135	0.33	+0.8
4,428,243	-		AO353_20135	0.33	+0.7
4,428,243	-		AO353_20135	0.33	-1.1
4,428,243	-		AO353_20135	0.33	-1.3
4,428,243	-		AO353_20135	0.33	-1.3
4,428,305	+		AO353_20135	0.40	-1.5
4,428,306	-		AO353_20135	0.40	+0.0
4,428,386	+		AO353_20135	0.48	-1.0
4,428,386	+		AO353_20135	0.48	-1.9
4,428,386	+		AO353_20135	0.48	-1.5
4,428,386	+		AO353_20135	0.48	+0.5
4,428,386	+		AO353_20135	0.48	+0.3
4,428,386	+		AO353_20135	0.48	-1.3
4,428,387	-		AO353_20135	0.48	-1.0
4,428,387	-		AO353_20135	0.48	-0.6
4,428,387	-		AO353_20135	0.48	-0.2
4,428,439	-		AO353_20135	0.54	+0.5
4,428,439	-		AO353_20135	0.54	-0.2
4,428,597	+		AO353_20135	0.71	-0.7
4,428,608	+		AO353_20135	0.72	-0.8
4,428,608	+		AO353_20135	0.72	+1.3
4,428,609	-		AO353_20135	0.72	+0.9
4,428,609	-		AO353_20135	0.72	-1.2
4,428,609	-		AO353_20135	0.72	-0.3
4,428,609	-		AO353_20135	0.72	-0.1
4,428,704	+		AO353_20135	0.82	+0.0
4,428,704	+		AO353_20135	0.82	-0.9
4,428,705	-		AO353_20135	0.82	-1.1
4,428,705	-		AO353_20135	0.82	-1.3
4,428,705	-		AO353_20135	0.82	-3.1
4,428,804	-				-1.1
4,428,831	+				+1.3
4,428,831	+				-0.5
4,428,831	+				-1.3
4,428,831	+				+1.3
4,428,831	+				-1.2
4,428,831	+				+0.3
4,428,831	+				+0.5
4,428,831	+				-0.5
4,428,832	-				-0.1
4,428,832	-				-0.6
4,428,832	-				-1.3
4,428,832	-				+0.3
4,428,832	-				+0.5
4,428,832	-				+0.8
4,428,832	-				-0.6
4,428,832	-				-0.4
4,428,832	-				-0.8
4,428,832	-				+0.4
4,428,832	-				-0.1
4,428,832	-				+0.3
4,428,832	-				-0.9
4,428,844	+				+0.0
4,428,899	+				-1.5
4,428,899	+				-1.0
4,428,899	+				-0.3
4,428,899	+				+0.6
4,428,899	+				+0.3
4,428,900	-				+0.6
4,428,900	-				+0.3
4,428,900	-				-0.5
4,428,935	-				-0.7
4,428,942	+				+0.5
4,428,943	-				+0.5
4,428,943	-				-1.4
4,428,943	-				-1.1
4,428,948	+				+0.0
4,428,948	+				+1.5
4,428,949	-				+0.0
4,428,949	-				-1.1
4,428,966	+				+0.1
4,428,966	+				-0.7
4,428,968	+				+0.8
4,428,968	+				+1.3
4,428,968	+				-0.9
4,428,968	+				-0.7
4,428,969	-				+0.7
4,428,969	-				+0.1
4,428,969	-				-0.8
4,428,969	-				+0.0
4,428,969	-				-0.8
4,428,969	-				-0.3
4,428,969	-				-1.4
4,428,969	-				-1.8
4,429,007	-				+0.7
4,429,025	-				+1.5
4,429,086	+				+2.0
4,429,087	-				+1.3
4,429,087	-				+1.0
4,429,087	-				+1.8
4,429,087	-				-0.0
4,429,094	+				-0.7
4,429,095	-				+1.7
4,429,116	+				-0.2
4,429,117	-				-2.5
4,429,144	+				-0.6
4,429,193	-				-0.7
4,429,364	+				-0.1
4,429,428	+				+0.3
4,429,505	+				+1.8
4,429,505	+				-0.0
4,429,560	-				+0.1
4,429,560	-				-0.3
4,429,611	-				+0.8
4,429,611	-				-0.5
4,429,627	+				+0.8
4,429,627	+				-0.1
4,429,628	-				+0.3
4,429,628	-				+1.3
4,429,628	-				+0.3
4,429,659	+				+1.7
4,429,659	+				-1.1
4,429,660	-				-1.5
4,429,660	-				-0.3
4,429,677	+				-2.1
4,429,677	+				-1.7
4,429,677	+				+0.0
4,429,677	+				-0.7
4,429,677	+				-2.2
4,429,678	-				-1.1
4,429,754	+				-1.4
4,429,779	-				-1.2
4,429,795	+				-0.9
4,429,795	+				+0.3
4,429,861	-		AO353_20140	0.19	+0.5
4,429,867	+		AO353_20140	0.21	-0.6