Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19765 and AO353_19770 are separated by 153 nucleotides AO353_19770 and AO353_19775 overlap by 1 nucleotides AO353_19775 and AO353_19780 overlap by 4 nucleotides
AO353_19765: AO353_19765 - hypothetical protein, at 4,344,919 to 4,345,998
_19765
AO353_19770: AO353_19770 - peptidase, at 4,346,152 to 4,346,466
_19770
AO353_19775: AO353_19775 - transcriptional regulator, at 4,346,466 to 4,347,134
_19775
AO353_19780: AO353_19780 - histidine kinase, at 4,347,131 to 4,348,444
_19780
Position (kb) 4346
4347 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4345.238 kb on + strand, within AO353_19765 at 4345.238 kb on + strand, within AO353_19765 at 4345.256 kb on + strand, within AO353_19765 at 4345.256 kb on + strand, within AO353_19765 at 4345.257 kb on - strand, within AO353_19765 at 4345.257 kb on - strand, within AO353_19765 at 4345.281 kb on - strand, within AO353_19765 at 4345.281 kb on - strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.707 kb on - strand, within AO353_19765 at 4345.938 kb on + strand at 4345.998 kb on + strand at 4346.027 kb on + strand at 4346.044 kb on + strand at 4346.044 kb on + strand at 4346.044 kb on + strand at 4346.045 kb on - strand at 4346.045 kb on - strand at 4346.078 kb on - strand at 4346.078 kb on - strand at 4346.091 kb on + strand at 4346.091 kb on + strand at 4346.092 kb on - strand at 4346.092 kb on - strand at 4346.092 kb on - strand at 4346.108 kb on + strand at 4346.108 kb on + strand at 4346.113 kb on + strand at 4346.114 kb on - strand at 4346.114 kb on - strand at 4346.114 kb on - strand at 4346.114 kb on - strand at 4346.114 kb on - strand at 4346.114 kb on - strand at 4346.122 kb on + strand at 4346.122 kb on + strand at 4346.123 kb on - strand at 4346.123 kb on - strand at 4346.146 kb on + strand at 4346.147 kb on - strand at 4346.147 kb on - strand at 4346.147 kb on - strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.161 kb on - strand at 4346.161 kb on - strand at 4346.174 kb on - strand at 4346.174 kb on - strand at 4346.326 kb on - strand, within AO353_19770 at 4346.366 kb on - strand, within AO353_19770 at 4346.366 kb on - strand, within AO353_19770 at 4346.371 kb on + strand, within AO353_19770 at 4346.372 kb on - strand, within AO353_19770 at 4346.372 kb on - strand, within AO353_19770 at 4346.495 kb on - strand at 4346.539 kb on - strand, within AO353_19775 at 4346.578 kb on - strand, within AO353_19775 at 4346.598 kb on + strand, within AO353_19775 at 4346.599 kb on - strand, within AO353_19775 at 4346.599 kb on - strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.758 kb on - strand, within AO353_19775 at 4346.946 kb on + strand, within AO353_19775 at 4346.947 kb on - strand, within AO353_19775 at 4346.947 kb on - strand, within AO353_19775 at 4347.004 kb on - strand, within AO353_19775 at 4347.108 kb on + strand at 4347.242 kb on + strand at 4347.243 kb on - strand at 4347.344 kb on + strand, within AO353_19780 at 4347.344 kb on + strand, within AO353_19780 at 4347.368 kb on + strand, within AO353_19780 at 4347.368 kb on + strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 4,345,238 + AO353_19765 0.30 +0.3 4,345,238 + AO353_19765 0.30 -0.3 4,345,256 + AO353_19765 0.31 +0.3 4,345,256 + AO353_19765 0.31 +1.8 4,345,257 - AO353_19765 0.31 -0.2 4,345,257 - AO353_19765 0.31 -1.3 4,345,281 - AO353_19765 0.34 +0.5 4,345,281 - AO353_19765 0.34 -0.6 4,345,312 + AO353_19765 0.36 +0.5 4,345,312 + AO353_19765 0.36 -0.4 4,345,312 + AO353_19765 0.36 -1.3 4,345,312 + AO353_19765 0.36 -0.3 4,345,312 + AO353_19765 0.36 +0.0 4,345,312 + AO353_19765 0.36 -0.1 4,345,313 - AO353_19765 0.36 +2.3 4,345,313 - AO353_19765 0.36 -0.9 4,345,313 - AO353_19765 0.36 +0.4 4,345,313 - AO353_19765 0.36 +0.6 4,345,313 - AO353_19765 0.36 -0.1 4,345,313 - AO353_19765 0.36 -0.0 4,345,706 + AO353_19765 0.73 +0.1 4,345,706 + AO353_19765 0.73 +0.6 4,345,706 + AO353_19765 0.73 -0.5 4,345,706 + AO353_19765 0.73 -1.0 4,345,706 + AO353_19765 0.73 -1.0 4,345,706 + AO353_19765 0.73 -0.5 4,345,707 - AO353_19765 0.73 +0.9 4,345,938 + -0.1 4,345,998 + +0.2 4,346,027 + -1.0 4,346,044 + -1.0 4,346,044 + -1.9 4,346,044 + -0.3 4,346,045 - +3.0 4,346,045 - -0.2 4,346,078 - +0.7 4,346,078 - +0.1 4,346,091 + +0.4 4,346,091 + +1.0 4,346,092 - +0.1 4,346,092 - -0.4 4,346,092 - -1.0 4,346,108 + -1.5 4,346,108 + -0.9 4,346,113 + +2.3 4,346,114 - -0.1 4,346,114 - +0.1 4,346,114 - -0.7 4,346,114 - -0.4 4,346,114 - +0.1 4,346,114 - -1.3 4,346,122 + +0.8 4,346,122 + -0.6 4,346,123 - -0.9 4,346,123 - -0.7 4,346,146 + -0.6 4,346,147 - -0.0 4,346,147 - -1.7 4,346,147 - -0.7 4,346,150 + +0.2 4,346,150 + -0.6 4,346,150 + -0.4 4,346,150 + -0.5 4,346,150 + +0.8 4,346,150 + +0.2 4,346,150 + +0.3 4,346,150 + +0.8 4,346,150 + -0.2 4,346,150 + -0.4 4,346,150 + +1.0 4,346,150 + -1.3 4,346,151 - -0.5 4,346,151 - +1.3 4,346,151 - +0.5 4,346,151 - -0.3 4,346,151 - -1.3 4,346,151 - +0.2 4,346,151 - -1.3 4,346,151 - -0.0 4,346,151 - -0.7 4,346,151 - -0.5 4,346,151 - -0.7 4,346,151 - +1.0 4,346,151 - +0.8 4,346,151 - +0.3 4,346,151 - -1.3 4,346,151 - +1.3 4,346,151 - -1.7 4,346,151 - -0.6 4,346,151 - -1.0 4,346,151 - -0.4 4,346,151 - +0.5 4,346,151 - -0.7 4,346,151 - -0.5 4,346,151 - -0.7 4,346,151 - +1.9 4,346,151 - -1.2 4,346,151 - +0.7 4,346,151 - -0.2 4,346,161 - +0.3 4,346,161 - -0.6 4,346,174 - +0.3 4,346,174 - -1.7 4,346,326 - AO353_19770 0.55 -1.4 4,346,366 - AO353_19770 0.68 -1.0 4,346,366 - AO353_19770 0.68 -0.7 4,346,371 + AO353_19770 0.70 -0.1 4,346,372 - AO353_19770 0.70 -1.0 4,346,372 - AO353_19770 0.70 -0.6 4,346,495 - -0.6 4,346,539 - AO353_19775 0.11 +0.3 4,346,578 - AO353_19775 0.17 -0.3 4,346,598 + AO353_19775 0.20 -0.5 4,346,599 - AO353_19775 0.20 -1.4 4,346,599 - AO353_19775 0.20 +0.3 4,346,757 + AO353_19775 0.43 -1.2 4,346,757 + AO353_19775 0.43 -0.7 4,346,757 + AO353_19775 0.43 +0.2 4,346,757 + AO353_19775 0.43 -0.5 4,346,758 - AO353_19775 0.44 +1.2 4,346,946 + AO353_19775 0.72 +0.4 4,346,947 - AO353_19775 0.72 -0.4 4,346,947 - AO353_19775 0.72 -1.4 4,347,004 - AO353_19775 0.80 -0.6 4,347,108 + +1.0 4,347,242 + +0.5 4,347,243 - -0.7 4,347,344 + AO353_19780 0.16 -2.0 4,347,344 + AO353_19780 0.16 +2.1 4,347,368 + AO353_19780 0.18 -0.5 4,347,368 + AO353_19780 0.18 -0.3 4,347,369 - AO353_19780 0.18 +0.6 4,347,369 - AO353_19780 0.18 -1.7 4,347,369 - AO353_19780 0.18 +0.5 4,347,369 - AO353_19780 0.18 -0.5 4,347,369 - AO353_19780 0.18 +0.7
Or see this region's nucleotide sequence