Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19040 and AO353_19045 overlap by 4 nucleotides AO353_19045 and AO353_19050 are separated by 24 nucleotides AO353_19050 and AO353_19055 are separated by 93 nucleotides AO353_19055 and AO353_19060 are separated by 113 nucleotides
AO353_19040: AO353_19040 - thioredoxin, at 4,180,870 to 4,181,256
_19040
AO353_19045: AO353_19045 - 2-dehydropantoate 2-reductase, at 4,181,253 to 4,182,215
_19045
AO353_19050: AO353_19050 - 5'-nucleotidase, at 4,182,240 to 4,183,145
_19050
AO353_19055: AO353_19055 - universal stress protein UspA, at 4,183,239 to 4,183,739
_19055
AO353_19060: AO353_19060 - CysB family transcriptional regulator, at 4,183,853 to 4,184,827
_19060
Position (kb) 4182
4183
4184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4181.326 kb on + strand at 4181.326 kb on + strand at 4181.326 kb on + strand at 4181.327 kb on - strand at 4181.421 kb on + strand, within AO353_19045 at 4181.454 kb on + strand, within AO353_19045 at 4181.471 kb on + strand, within AO353_19045 at 4181.472 kb on - strand, within AO353_19045 at 4181.472 kb on - strand, within AO353_19045 at 4181.472 kb on - strand, within AO353_19045 at 4181.657 kb on + strand, within AO353_19045 at 4181.658 kb on - strand, within AO353_19045 at 4181.658 kb on - strand, within AO353_19045 at 4181.658 kb on - strand, within AO353_19045 at 4181.874 kb on + strand, within AO353_19045 at 4181.874 kb on + strand, within AO353_19045 at 4181.874 kb on + strand, within AO353_19045 at 4181.874 kb on + strand, within AO353_19045 at 4181.874 kb on + strand, within AO353_19045 at 4181.875 kb on - strand, within AO353_19045 at 4181.875 kb on - strand, within AO353_19045 at 4182.012 kb on + strand, within AO353_19045 at 4182.054 kb on + strand, within AO353_19045 at 4182.069 kb on + strand, within AO353_19045 at 4182.069 kb on + strand, within AO353_19045 at 4182.069 kb on + strand, within AO353_19045 at 4182.069 kb on + strand, within AO353_19045 at 4182.069 kb on + strand, within AO353_19045 at 4182.070 kb on - strand, within AO353_19045 at 4182.078 kb on + strand, within AO353_19045 at 4182.086 kb on + strand, within AO353_19045 at 4182.087 kb on - strand, within AO353_19045 at 4182.087 kb on - strand, within AO353_19045 at 4182.087 kb on - strand, within AO353_19045 at 4182.115 kb on - strand, within AO353_19045 at 4182.115 kb on - strand, within AO353_19045 at 4182.115 kb on - strand, within AO353_19045 at 4182.177 kb on + strand at 4182.177 kb on + strand at 4182.178 kb on - strand at 4182.178 kb on - strand at 4182.178 kb on - strand at 4182.178 kb on - strand at 4182.178 kb on - strand at 4182.178 kb on - strand at 4182.214 kb on - strand at 4182.214 kb on - strand at 4182.261 kb on - strand at 4182.261 kb on - strand at 4182.261 kb on - strand at 4182.321 kb on + strand at 4182.321 kb on + strand at 4182.322 kb on - strand at 4182.431 kb on + strand, within AO353_19050 at 4182.480 kb on - strand, within AO353_19050 at 4182.576 kb on + strand, within AO353_19050 at 4182.576 kb on + strand, within AO353_19050 at 4182.577 kb on - strand, within AO353_19050 at 4182.762 kb on + strand, within AO353_19050 at 4182.763 kb on - strand, within AO353_19050 at 4182.763 kb on - strand, within AO353_19050 at 4182.763 kb on - strand, within AO353_19050 at 4182.956 kb on + strand, within AO353_19050 at 4182.957 kb on - strand, within AO353_19050 at 4182.975 kb on - strand, within AO353_19050 at 4183.143 kb on + strand at 4183.144 kb on - strand at 4183.144 kb on - strand at 4183.195 kb on + strand at 4183.206 kb on - strand at 4183.206 kb on - strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.278 kb on + strand at 4183.278 kb on + strand at 4183.279 kb on - strand at 4183.279 kb on - strand at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.361 kb on + strand, within AO353_19055 at 4183.361 kb on + strand, within AO353_19055 at 4183.362 kb on - strand, within AO353_19055 at 4183.362 kb on - strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.540 kb on + strand, within AO353_19055 at 4183.540 kb on + strand, within AO353_19055 at 4183.540 kb on + strand, within AO353_19055 at 4183.541 kb on - strand, within AO353_19055 at 4183.541 kb on - strand, within AO353_19055 at 4183.609 kb on + strand, within AO353_19055 at 4183.609 kb on + strand, within AO353_19055 at 4183.610 kb on - strand, within AO353_19055 at 4183.610 kb on - strand, within AO353_19055 at 4183.733 kb on + strand at 4183.733 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.738 kb on - strand at 4183.798 kb on - strand at 4183.800 kb on - strand at 4183.800 kb on - strand at 4183.803 kb on + strand at 4183.803 kb on + strand at 4183.803 kb on + strand at 4183.806 kb on - strand at 4183.832 kb on + strand at 4183.832 kb on + strand at 4183.833 kb on - strand at 4183.833 kb on - strand at 4183.852 kb on + strand at 4183.852 kb on + strand at 4183.852 kb on + strand at 4183.853 kb on - strand at 4183.874 kb on + strand at 4183.874 kb on + strand at 4183.875 kb on - strand at 4183.931 kb on + strand at 4183.931 kb on + strand at 4183.931 kb on + strand at 4183.931 kb on + strand at 4183.932 kb on - strand at 4183.932 kb on - strand at 4183.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 4,181,326 + -0.0 4,181,326 + +1.3 4,181,326 + +0.7 4,181,327 - -1.1 4,181,421 + AO353_19045 0.17 -1.2 4,181,454 + AO353_19045 0.21 +0.9 4,181,471 + AO353_19045 0.23 -0.5 4,181,472 - AO353_19045 0.23 -0.1 4,181,472 - AO353_19045 0.23 +0.7 4,181,472 - AO353_19045 0.23 -0.0 4,181,657 + AO353_19045 0.42 -0.1 4,181,658 - AO353_19045 0.42 +0.9 4,181,658 - AO353_19045 0.42 -0.1 4,181,658 - AO353_19045 0.42 +0.1 4,181,874 + AO353_19045 0.64 -0.1 4,181,874 + AO353_19045 0.64 +1.1 4,181,874 + AO353_19045 0.64 -1.0 4,181,874 + AO353_19045 0.64 +1.0 4,181,874 + AO353_19045 0.64 +0.5 4,181,875 - AO353_19045 0.65 -0.8 4,181,875 - AO353_19045 0.65 +0.2 4,182,012 + AO353_19045 0.79 -0.8 4,182,054 + AO353_19045 0.83 +1.6 4,182,069 + AO353_19045 0.85 +1.0 4,182,069 + AO353_19045 0.85 +2.0 4,182,069 + AO353_19045 0.85 -1.7 4,182,069 + AO353_19045 0.85 +0.6 4,182,069 + AO353_19045 0.85 -0.4 4,182,070 - AO353_19045 0.85 +0.8 4,182,078 + AO353_19045 0.86 -2.9 4,182,086 + AO353_19045 0.87 +1.3 4,182,087 - AO353_19045 0.87 +0.6 4,182,087 - AO353_19045 0.87 +0.5 4,182,087 - AO353_19045 0.87 -0.4 4,182,115 - AO353_19045 0.90 -1.2 4,182,115 - AO353_19045 0.90 +1.0 4,182,115 - AO353_19045 0.90 -1.0 4,182,177 + +0.4 4,182,177 + -0.9 4,182,178 - -0.2 4,182,178 - +1.3 4,182,178 - +0.8 4,182,178 - -0.3 4,182,178 - +1.6 4,182,178 - +0.9 4,182,214 - -0.7 4,182,214 - +0.1 4,182,261 - -0.8 4,182,261 - -0.7 4,182,261 - +0.3 4,182,321 + -0.1 4,182,321 + -1.0 4,182,322 - -0.2 4,182,431 + AO353_19050 0.21 -1.0 4,182,480 - AO353_19050 0.26 -0.9 4,182,576 + AO353_19050 0.37 -0.3 4,182,576 + AO353_19050 0.37 -0.2 4,182,577 - AO353_19050 0.37 -0.4 4,182,762 + AO353_19050 0.58 -0.9 4,182,763 - AO353_19050 0.58 -0.3 4,182,763 - AO353_19050 0.58 -0.8 4,182,763 - AO353_19050 0.58 -2.7 4,182,956 + AO353_19050 0.79 +0.2 4,182,957 - AO353_19050 0.79 +0.4 4,182,975 - AO353_19050 0.81 -0.8 4,183,143 + +0.6 4,183,144 - -0.9 4,183,144 - -0.1 4,183,195 + -1.0 4,183,206 - +0.3 4,183,206 - +1.9 4,183,257 + +0.6 4,183,257 + +0.8 4,183,257 + -0.4 4,183,257 + +0.2 4,183,257 + +0.8 4,183,257 + +0.5 4,183,257 + +0.9 4,183,257 + -0.2 4,183,257 + +0.7 4,183,257 + +1.1 4,183,257 + +0.6 4,183,257 + -0.5 4,183,257 + -0.4 4,183,257 + -1.3 4,183,257 + +0.4 4,183,258 - -0.3 4,183,258 - -1.5 4,183,258 - -0.4 4,183,258 - -1.5 4,183,258 - +0.4 4,183,258 - -1.4 4,183,258 - -0.5 4,183,258 - +0.6 4,183,258 - -0.7 4,183,258 - -0.3 4,183,278 + -0.3 4,183,278 + +1.0 4,183,279 - -0.5 4,183,279 - -0.4 4,183,338 + AO353_19055 0.20 -2.7 4,183,338 + AO353_19055 0.20 -1.7 4,183,338 + AO353_19055 0.20 -0.2 4,183,338 + AO353_19055 0.20 +0.1 4,183,338 + AO353_19055 0.20 -0.8 4,183,338 + AO353_19055 0.20 +1.3 4,183,339 - AO353_19055 0.20 +0.8 4,183,339 - AO353_19055 0.20 -0.3 4,183,339 - AO353_19055 0.20 +0.1 4,183,339 - AO353_19055 0.20 -1.0 4,183,339 - AO353_19055 0.20 -1.7 4,183,339 - AO353_19055 0.20 +0.0 4,183,339 - AO353_19055 0.20 +0.4 4,183,339 - AO353_19055 0.20 -0.7 4,183,361 + AO353_19055 0.24 +0.3 4,183,361 + AO353_19055 0.24 -0.0 4,183,362 - AO353_19055 0.25 -0.5 4,183,362 - AO353_19055 0.25 -1.2 4,183,395 + AO353_19055 0.31 +0.3 4,183,395 + AO353_19055 0.31 -0.0 4,183,395 + AO353_19055 0.31 -0.3 4,183,395 + AO353_19055 0.31 -0.7 4,183,396 - AO353_19055 0.31 +2.0 4,183,396 - AO353_19055 0.31 -0.6 4,183,396 - AO353_19055 0.31 +0.1 4,183,396 - AO353_19055 0.31 -0.2 4,183,396 - AO353_19055 0.31 +1.1 4,183,396 - AO353_19055 0.31 -0.5 4,183,540 + AO353_19055 0.60 -0.7 4,183,540 + AO353_19055 0.60 +1.2 4,183,540 + AO353_19055 0.60 -0.1 4,183,541 - AO353_19055 0.60 +0.0 4,183,541 - AO353_19055 0.60 -0.4 4,183,609 + AO353_19055 0.74 +1.0 4,183,609 + AO353_19055 0.74 +1.1 4,183,610 - AO353_19055 0.74 -0.0 4,183,610 - AO353_19055 0.74 -3.3 4,183,733 + -2.0 4,183,733 + +1.0 4,183,737 + -0.8 4,183,737 + -1.0 4,183,737 + +0.0 4,183,737 + +0.3 4,183,737 + +0.2 4,183,738 - +0.4 4,183,798 - -0.6 4,183,800 - -2.0 4,183,800 - -0.5 4,183,803 + -0.9 4,183,803 + +0.5 4,183,803 + +1.6 4,183,806 - +2.3 4,183,832 + -0.0 4,183,832 + +0.9 4,183,833 - -0.7 4,183,833 - +0.3 4,183,852 + +1.3 4,183,852 + +2.2 4,183,852 + -1.3 4,183,853 - -2.5 4,183,874 + -1.3 4,183,874 + +0.1 4,183,875 - +1.1 4,183,931 + -1.0 4,183,931 + +1.6 4,183,931 + -0.2 4,183,931 + -1.5 4,183,932 - +0.2 4,183,932 - +0.7 4,183,932 - -1.0
Or see this region's nucleotide sequence