Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17680

Experiment: Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17675 and AO353_17680 are separated by 4 nucleotidesAO353_17680 and AO353_17685 are separated by 28 nucleotidesAO353_17685 and AO353_17690 are separated by 84 nucleotidesAO353_17690 and AO353_17695 are separated by 85 nucleotides AO353_17675: AO353_17675 - hypothetical protein, at 3,894,456 to 3,895,571 _17675 AO353_17680: AO353_17680 - MBL fold metallo-hydrolase, at 3,895,576 to 3,896,334 _17680 AO353_17685: AO353_17685 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 3,896,363 to 3,897,073 _17685 AO353_17690: AO353_17690 - tRNA-Ser, at 3,897,158 to 3,897,247 _17690 AO353_17695: AO353_17695 - MFS transporter, at 3,897,333 to 3,898,550 _17695 Position (kb) 3895 3896 3897Strain fitness (log2 ratio) -2 -1 0 1 2at 3894.614 kb on + strand, within AO353_17675at 3894.614 kb on + strand, within AO353_17675at 3894.684 kb on + strand, within AO353_17675at 3894.735 kb on + strand, within AO353_17675at 3895.011 kb on + strand, within AO353_17675at 3895.011 kb on + strand, within AO353_17675at 3895.011 kb on + strand, within AO353_17675at 3895.012 kb on - strand, within AO353_17675at 3895.012 kb on - strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.332 kb on + strand, within AO353_17675at 3895.333 kb on - strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.335 kb on + strand, within AO353_17675at 3895.480 kb on + strandat 3895.480 kb on + strandat 3895.480 kb on + strandat 3895.480 kb on + strandat 3895.481 kb on - strandat 3895.602 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.642 kb on + strandat 3895.643 kb on - strandat 3895.643 kb on - strandat 3895.643 kb on - strandat 3895.643 kb on - strandat 3895.643 kb on - strandat 3895.706 kb on + strand, within AO353_17680at 3895.706 kb on + strand, within AO353_17680at 3895.706 kb on + strand, within AO353_17680at 3895.706 kb on + strand, within AO353_17680at 3895.707 kb on - strand, within AO353_17680at 3895.789 kb on + strand, within AO353_17680at 3895.789 kb on + strand, within AO353_17680at 3895.790 kb on - strand, within AO353_17680at 3895.804 kb on + strand, within AO353_17680at 3895.804 kb on + strand, within AO353_17680at 3895.805 kb on - strand, within AO353_17680at 3895.945 kb on + strand, within AO353_17680at 3895.945 kb on + strand, within AO353_17680at 3895.945 kb on + strand, within AO353_17680at 3895.945 kb on + strand, within AO353_17680at 3895.945 kb on + strand, within AO353_17680at 3895.946 kb on - strand, within AO353_17680at 3895.999 kb on + strand, within AO353_17680at 3895.999 kb on + strand, within AO353_17680at 3896.095 kb on + strand, within AO353_17680at 3896.198 kb on + strand, within AO353_17680at 3896.199 kb on - strand, within AO353_17680at 3896.325 kb on + strandat 3896.325 kb on + strandat 3896.325 kb on + strandat 3896.325 kb on + strandat 3896.326 kb on - strandat 3896.326 kb on - strandat 3896.341 kb on + strandat 3896.341 kb on + strandat 3896.341 kb on + strandat 3896.341 kb on + strandat 3896.341 kb on + strandat 3896.341 kb on + strandat 3896.341 kb on + strandat 3896.342 kb on - strandat 3896.342 kb on - strandat 3896.345 kb on + strandat 3896.345 kb on + strandat 3896.345 kb on + strandat 3896.345 kb on + strandat 3896.345 kb on + strandat 3896.345 kb on + strandat 3896.346 kb on - strandat 3896.648 kb on + strand, within AO353_17685at 3896.709 kb on - strand, within AO353_17685at 3897.036 kb on - strandat 3897.071 kb on + strandat 3897.072 kb on - strandat 3897.142 kb on + strandat 3897.142 kb on + strandat 3897.220 kb on + strand, within AO353_17690at 3897.220 kb on + strand, within AO353_17690at 3897.249 kb on + strandat 3897.249 kb on + strandat 3897.249 kb on + strandat 3897.249 kb on + strandat 3897.253 kb on + strandat 3897.253 kb on + strandat 3897.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
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3,894,614 + AO353_17675 0.14 -1.2
3,894,614 + AO353_17675 0.14 -0.7
3,894,684 + AO353_17675 0.20 -1.2
3,894,735 + AO353_17675 0.25 -1.8
3,895,011 + AO353_17675 0.50 -1.2
3,895,011 + AO353_17675 0.50 +0.4
3,895,011 + AO353_17675 0.50 +0.3
3,895,012 - AO353_17675 0.50 -0.6
3,895,012 - AO353_17675 0.50 -2.4
3,895,332 + AO353_17675 0.78 -1.0
3,895,332 + AO353_17675 0.78 +0.7
3,895,332 + AO353_17675 0.78 -1.6
3,895,332 + AO353_17675 0.78 +1.2
3,895,333 - AO353_17675 0.79 -1.8
3,895,335 + AO353_17675 0.79 -1.8
3,895,335 + AO353_17675 0.79 -1.1
3,895,335 + AO353_17675 0.79 -1.7
3,895,335 + AO353_17675 0.79 +1.8
3,895,335 + AO353_17675 0.79 +0.7
3,895,335 + AO353_17675 0.79 +0.8
3,895,335 + AO353_17675 0.79 -2.6
3,895,335 + AO353_17675 0.79 -1.2
3,895,480 + -0.9
3,895,480 + -0.5
3,895,480 + +0.9
3,895,480 + -1.4
3,895,481 - -2.5
3,895,602 + -0.7
3,895,642 + -1.9
3,895,642 + -0.6
3,895,642 + -1.3
3,895,642 + -0.4
3,895,642 + +0.1
3,895,642 + +2.1
3,895,642 + +1.0
3,895,642 + -0.6
3,895,643 - +1.0
3,895,643 - -0.6
3,895,643 - -0.8
3,895,643 - -0.3
3,895,643 - -0.6
3,895,706 + AO353_17680 0.17 -1.6
3,895,706 + AO353_17680 0.17 +0.3
3,895,706 + AO353_17680 0.17 +1.9
3,895,706 + AO353_17680 0.17 +0.8
3,895,707 - AO353_17680 0.17 -1.9
3,895,789 + AO353_17680 0.28 -0.3
3,895,789 + AO353_17680 0.28 -1.0
3,895,790 - AO353_17680 0.28 -1.0
3,895,804 + AO353_17680 0.30 -1.1
3,895,804 + AO353_17680 0.30 +0.4
3,895,805 - AO353_17680 0.30 -1.9
3,895,945 + AO353_17680 0.49 +0.4
3,895,945 + AO353_17680 0.49 +0.2
3,895,945 + AO353_17680 0.49 -1.3
3,895,945 + AO353_17680 0.49 -0.5
3,895,945 + AO353_17680 0.49 -0.8
3,895,946 - AO353_17680 0.49 -1.6
3,895,999 + AO353_17680 0.56 -1.6
3,895,999 + AO353_17680 0.56 -1.8
3,896,095 + AO353_17680 0.68 -2.6
3,896,198 + AO353_17680 0.82 +0.4
3,896,199 - AO353_17680 0.82 -1.8
3,896,325 + +0.9
3,896,325 + -0.6
3,896,325 + +0.6
3,896,325 + +1.8
3,896,326 - -1.8
3,896,326 - -2.6
3,896,341 + +0.4
3,896,341 + +0.2
3,896,341 + +0.6
3,896,341 + +1.0
3,896,341 + -0.8
3,896,341 + +0.4
3,896,341 + +1.4
3,896,342 - -0.9
3,896,342 - +0.4
3,896,345 + -1.4
3,896,345 + -2.2
3,896,345 + -0.4
3,896,345 + -0.8
3,896,345 + -1.2
3,896,345 + -0.3
3,896,346 - +0.4
3,896,648 + AO353_17685 0.40 -0.1
3,896,709 - AO353_17685 0.49 +0.0
3,897,036 - -0.9
3,897,071 + +0.3
3,897,072 - -0.6
3,897,142 + -0.4
3,897,142 + -2.6
3,897,220 + AO353_17690 0.69 +0.4
3,897,220 + AO353_17690 0.69 +0.9
3,897,249 + +0.4
3,897,249 + -1.4
3,897,249 + +2.0
3,897,249 + +0.2
3,897,253 + +0.3
3,897,253 + -0.5
3,897,253 + -0.3

Or see this region's nucleotide sequence