Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17035

Experiment: Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17030 and AO353_17035 are separated by 143 nucleotidesAO353_17035 and AO353_17040 are separated by 39 nucleotidesAO353_17040 and AO353_17045 are separated by 5 nucleotides AO353_17030: AO353_17030 - serine hydrolase, at 3,765,960 to 3,767,105 _17030 AO353_17035: AO353_17035 - hypothetical protein, at 3,767,249 to 3,768,274 _17035 AO353_17040: AO353_17040 - pyridoxine 5'-phosphate oxidase, at 3,768,314 to 3,768,961 _17040 AO353_17045: AO353_17045 - 30S ribosomal protein S3, at 3,768,967 to 3,769,203 _17045 Position (kb) 3767 3768 3769Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.353 kb on + strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.354 kb on - strand, within AO353_17030at 3766.355 kb on + strand, within AO353_17030at 3766.355 kb on + strand, within AO353_17030at 3766.356 kb on - strand, within AO353_17030at 3766.356 kb on - strand, within AO353_17030at 3766.356 kb on - strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.440 kb on + strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.441 kb on - strand, within AO353_17030at 3766.727 kb on + strand, within AO353_17030at 3766.728 kb on - strand, within AO353_17030at 3766.728 kb on - strand, within AO353_17030at 3766.782 kb on + strand, within AO353_17030at 3766.782 kb on + strand, within AO353_17030at 3766.782 kb on + strand, within AO353_17030at 3766.782 kb on + strand, within AO353_17030at 3766.782 kb on + strand, within AO353_17030at 3766.783 kb on - strand, within AO353_17030at 3766.783 kb on - strand, within AO353_17030at 3766.783 kb on - strand, within AO353_17030at 3766.783 kb on - strand, within AO353_17030at 3766.783 kb on - strand, within AO353_17030at 3766.783 kb on - strand, within AO353_17030at 3766.870 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.901 kb on + strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.902 kb on - strand, within AO353_17030at 3766.921 kb on + strand, within AO353_17030at 3766.921 kb on + strand, within AO353_17030at 3766.922 kb on - strand, within AO353_17030at 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.046 kb on + strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.047 kb on - strandat 3767.110 kb on + strandat 3767.111 kb on - strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.175 kb on + strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.176 kb on - strandat 3767.177 kb on + strandat 3767.177 kb on + strandat 3767.177 kb on + strandat 3767.177 kb on + strandat 3767.177 kb on + strandat 3767.178 kb on - strandat 3767.178 kb on - strandat 3767.178 kb on - strandat 3767.178 kb on - strandat 3767.197 kb on + strandat 3767.200 kb on - strandat 3767.200 kb on - strandat 3767.200 kb on - strandat 3767.226 kb on + strandat 3767.226 kb on + strandat 3767.226 kb on + strandat 3767.226 kb on + strandat 3767.226 kb on + strandat 3767.226 kb on + strandat 3767.227 kb on - strandat 3767.227 kb on - strandat 3767.227 kb on - strandat 3767.268 kb on + strandat 3767.269 kb on - strandat 3767.618 kb on + strand, within AO353_17035at 3767.618 kb on + strand, within AO353_17035at 3767.619 kb on - strand, within AO353_17035at 3767.619 kb on - strand, within AO353_17035at 3767.656 kb on + strand, within AO353_17035at 3767.694 kb on + strand, within AO353_17035at 3767.695 kb on - strand, within AO353_17035at 3767.814 kb on + strand, within AO353_17035at 3767.815 kb on - strand, within AO353_17035at 3767.815 kb on - strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.056 kb on + strand, within AO353_17035at 3768.057 kb on - strand, within AO353_17035at 3768.057 kb on - strand, within AO353_17035at 3768.057 kb on - strand, within AO353_17035at 3768.272 kb on + strandat 3768.313 kb on + strandat 3768.980 kb on + strandat 3768.980 kb on + strandat 3768.980 kb on + strandat 3769.030 kb on - strand, within AO353_17045at 3769.030 kb on - strand, within AO353_17045at 3769.030 kb on - strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.142 kb on + strand, within AO353_17045at 3769.143 kb on - strand, within AO353_17045at 3769.143 kb on - strand, within AO353_17045at 3769.143 kb on - strand, within AO353_17045at 3769.143 kb on - strand, within AO353_17045at 3769.160 kb on + strand, within AO353_17045at 3769.160 kb on + strand, within AO353_17045at 3769.160 kb on + strand, within AO353_17045at 3769.160 kb on + strand, within AO353_17045at 3769.160 kb on + strand, within AO353_17045at 3769.161 kb on - strand, within AO353_17045at 3769.161 kb on - strand, within AO353_17045at 3769.161 kb on - strand, within AO353_17045at 3769.196 kb on + strandat 3769.196 kb on + strandat 3769.196 kb on + strandat 3769.196 kb on + strandat 3769.196 kb on + strandat 3769.197 kb on - strandat 3769.197 kb on - strandat 3769.197 kb on - strandat 3769.197 kb on - strandat 3769.197 kb on - strandat 3769.197 kb on - strandat 3769.197 kb on - strandat 3769.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
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3,766,353 + AO353_17030 0.34 -1.4
3,766,353 + AO353_17030 0.34 -1.1
3,766,353 + AO353_17030 0.34 -0.7
3,766,353 + AO353_17030 0.34 -1.2
3,766,353 + AO353_17030 0.34 +0.9
3,766,353 + AO353_17030 0.34 +1.2
3,766,353 + AO353_17030 0.34 -1.4
3,766,353 + AO353_17030 0.34 +1.1
3,766,353 + AO353_17030 0.34 -1.1
3,766,353 + AO353_17030 0.34 +0.1
3,766,354 - AO353_17030 0.34 -1.6
3,766,354 - AO353_17030 0.34 +0.9
3,766,354 - AO353_17030 0.34 +0.9
3,766,354 - AO353_17030 0.34 +0.6
3,766,354 - AO353_17030 0.34 +0.8
3,766,354 - AO353_17030 0.34 -0.5
3,766,354 - AO353_17030 0.34 -1.3
3,766,354 - AO353_17030 0.34 -1.1
3,766,354 - AO353_17030 0.34 -2.1
3,766,354 - AO353_17030 0.34 -2.0
3,766,354 - AO353_17030 0.34 -0.3
3,766,354 - AO353_17030 0.34 +0.9
3,766,354 - AO353_17030 0.34 +0.2
3,766,354 - AO353_17030 0.34 -0.6
3,766,354 - AO353_17030 0.34 +0.3
3,766,355 + AO353_17030 0.34 -0.6
3,766,355 + AO353_17030 0.34 +1.7
3,766,356 - AO353_17030 0.35 -0.9
3,766,356 - AO353_17030 0.35 -0.6
3,766,356 - AO353_17030 0.35 -0.0
3,766,440 + AO353_17030 0.42 +0.3
3,766,440 + AO353_17030 0.42 -0.6
3,766,440 + AO353_17030 0.42 +0.3
3,766,440 + AO353_17030 0.42 -1.4
3,766,440 + AO353_17030 0.42 +0.9
3,766,440 + AO353_17030 0.42 -1.3
3,766,440 + AO353_17030 0.42 -0.5
3,766,441 - AO353_17030 0.42 -1.0
3,766,441 - AO353_17030 0.42 -0.7
3,766,441 - AO353_17030 0.42 -0.3
3,766,441 - AO353_17030 0.42 -0.6
3,766,441 - AO353_17030 0.42 -0.5
3,766,441 - AO353_17030 0.42 +0.2
3,766,441 - AO353_17030 0.42 +0.0
3,766,727 + AO353_17030 0.67 +0.9
3,766,728 - AO353_17030 0.67 -1.3
3,766,728 - AO353_17030 0.67 -2.3
3,766,782 + AO353_17030 0.72 -1.1
3,766,782 + AO353_17030 0.72 -0.0
3,766,782 + AO353_17030 0.72 -0.6
3,766,782 + AO353_17030 0.72 -1.6
3,766,782 + AO353_17030 0.72 -0.1
3,766,783 - AO353_17030 0.72 +0.9
3,766,783 - AO353_17030 0.72 +0.0
3,766,783 - AO353_17030 0.72 -2.0
3,766,783 - AO353_17030 0.72 -2.0
3,766,783 - AO353_17030 0.72 -2.7
3,766,783 - AO353_17030 0.72 -2.6
3,766,870 + AO353_17030 0.79 -0.1
3,766,901 + AO353_17030 0.82 -2.7
3,766,901 + AO353_17030 0.82 -0.1
3,766,901 + AO353_17030 0.82 +0.0
3,766,901 + AO353_17030 0.82 -0.4
3,766,901 + AO353_17030 0.82 -0.6
3,766,901 + AO353_17030 0.82 -0.5
3,766,901 + AO353_17030 0.82 -0.3
3,766,901 + AO353_17030 0.82 -0.2
3,766,901 + AO353_17030 0.82 +0.4
3,766,901 + AO353_17030 0.82 +0.8
3,766,901 + AO353_17030 0.82 -0.8
3,766,901 + AO353_17030 0.82 -1.6
3,766,901 + AO353_17030 0.82 -0.6
3,766,901 + AO353_17030 0.82 -1.5
3,766,902 - AO353_17030 0.82 -2.0
3,766,902 - AO353_17030 0.82 -0.6
3,766,902 - AO353_17030 0.82 -0.6
3,766,902 - AO353_17030 0.82 -0.7
3,766,902 - AO353_17030 0.82 -1.2
3,766,902 - AO353_17030 0.82 -0.6
3,766,902 - AO353_17030 0.82 -2.0
3,766,902 - AO353_17030 0.82 -1.4
3,766,902 - AO353_17030 0.82 -0.1
3,766,902 - AO353_17030 0.82 -1.8
3,766,902 - AO353_17030 0.82 -0.8
3,766,902 - AO353_17030 0.82 -1.4
3,766,921 + AO353_17030 0.84 +0.5
3,766,921 + AO353_17030 0.84 +0.1
3,766,922 - AO353_17030 0.84 -1.0
3,767,046 + +0.4
3,767,046 + +0.1
3,767,046 + -0.6
3,767,046 + +0.5
3,767,046 + +1.4
3,767,046 + +0.5
3,767,046 + +0.2
3,767,046 + -0.7
3,767,046 + -0.7
3,767,046 + -1.3
3,767,046 + +0.9
3,767,046 + +0.4
3,767,046 + -0.9
3,767,046 + +1.1
3,767,046 + -0.3
3,767,046 + -1.4
3,767,046 + +0.3
3,767,046 + -1.1
3,767,046 + -0.1
3,767,046 + +0.2
3,767,046 + -0.6
3,767,047 - -3.9
3,767,047 - -2.0
3,767,047 - -2.3
3,767,047 - -2.3
3,767,047 - +1.4
3,767,047 - +0.3
3,767,047 - +0.3
3,767,047 - -2.1
3,767,047 - -2.3
3,767,047 - -2.1
3,767,047 - -0.7
3,767,047 - -1.6
3,767,047 - +0.7
3,767,047 - -1.7
3,767,047 - -1.4
3,767,047 - -2.5
3,767,047 - -2.2
3,767,110 + -0.7
3,767,111 - -0.8
3,767,175 + -1.3
3,767,175 + +0.2
3,767,175 + +1.2
3,767,175 + +0.4
3,767,175 + -0.6
3,767,175 + -0.2
3,767,175 + -2.5
3,767,175 + +1.2
3,767,176 - -2.2
3,767,176 - -1.6
3,767,176 - -2.7
3,767,176 - +0.6
3,767,176 - -1.4
3,767,176 - -2.5
3,767,176 - -0.6
3,767,176 - -2.8
3,767,176 - -1.5
3,767,176 - -1.4
3,767,176 - -2.3
3,767,177 + -0.5
3,767,177 + -2.0
3,767,177 + +0.3
3,767,177 + -1.4
3,767,177 + -2.0
3,767,178 - -2.7
3,767,178 - -0.6
3,767,178 - -0.9
3,767,178 - -2.4
3,767,197 + -0.6
3,767,200 - -1.7
3,767,200 - -1.6
3,767,200 - +0.1
3,767,226 + +0.9
3,767,226 + -1.6
3,767,226 + -0.2
3,767,226 + -1.2
3,767,226 + +0.6
3,767,226 + -0.3
3,767,227 - -1.4
3,767,227 - -0.5
3,767,227 - -3.6
3,767,268 + -2.7
3,767,269 - -2.5
3,767,618 + AO353_17035 0.36 -1.4
3,767,618 + AO353_17035 0.36 -2.3
3,767,619 - AO353_17035 0.36 -2.0
3,767,619 - AO353_17035 0.36 -1.9
3,767,656 + AO353_17035 0.40 -0.9
3,767,694 + AO353_17035 0.43 -2.9
3,767,695 - AO353_17035 0.43 -1.6
3,767,814 + AO353_17035 0.55 -0.6
3,767,815 - AO353_17035 0.55 -1.7
3,767,815 - AO353_17035 0.55 -1.6
3,768,056 + AO353_17035 0.79 -0.9
3,768,056 + AO353_17035 0.79 -3.0
3,768,056 + AO353_17035 0.79 +0.4
3,768,056 + AO353_17035 0.79 -2.6
3,768,056 + AO353_17035 0.79 -1.2
3,768,056 + AO353_17035 0.79 -1.7
3,768,056 + AO353_17035 0.79 -2.3
3,768,057 - AO353_17035 0.79 -2.5
3,768,057 - AO353_17035 0.79 -1.6
3,768,057 - AO353_17035 0.79 -2.4
3,768,272 + -0.8
3,768,313 + -2.2
3,768,980 + +0.3
3,768,980 + -0.9
3,768,980 + +1.2
3,769,030 - AO353_17045 0.27 -0.0
3,769,030 - AO353_17045 0.27 +0.1
3,769,030 - AO353_17045 0.27 -0.9
3,769,142 + AO353_17045 0.74 -0.1
3,769,142 + AO353_17045 0.74 +0.7
3,769,142 + AO353_17045 0.74 -0.1
3,769,142 + AO353_17045 0.74 +0.4
3,769,142 + AO353_17045 0.74 -0.4
3,769,142 + AO353_17045 0.74 +1.2
3,769,142 + AO353_17045 0.74 +1.6
3,769,142 + AO353_17045 0.74 +2.3
3,769,142 + AO353_17045 0.74 +0.0
3,769,143 - AO353_17045 0.74 +0.9
3,769,143 - AO353_17045 0.74 +0.2
3,769,143 - AO353_17045 0.74 +0.4
3,769,143 - AO353_17045 0.74 -1.8
3,769,160 + AO353_17045 0.81 -0.4
3,769,160 + AO353_17045 0.81 +0.7
3,769,160 + AO353_17045 0.81 +0.5
3,769,160 + AO353_17045 0.81 -0.1
3,769,160 + AO353_17045 0.81 +0.1
3,769,161 - AO353_17045 0.82 +1.9
3,769,161 - AO353_17045 0.82 +0.7
3,769,161 - AO353_17045 0.82 -1.9
3,769,196 + -0.5
3,769,196 + -1.4
3,769,196 + -0.3
3,769,196 + -1.7
3,769,196 + -0.1
3,769,197 - +0.7
3,769,197 - +1.4
3,769,197 - +1.3
3,769,197 - -1.6
3,769,197 - -0.2
3,769,197 - -0.6
3,769,197 - +2.1
3,769,197 - -1.7

Or see this region's nucleotide sequence