Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17030 and AO353_17035 are separated by 143 nucleotides AO353_17035 and AO353_17040 are separated by 39 nucleotides AO353_17040 and AO353_17045 are separated by 5 nucleotides
AO353_17030: AO353_17030 - serine hydrolase, at 3,765,960 to 3,767,105
_17030
AO353_17035: AO353_17035 - hypothetical protein, at 3,767,249 to 3,768,274
_17035
AO353_17040: AO353_17040 - pyridoxine 5'-phosphate oxidase, at 3,768,314 to 3,768,961
_17040
AO353_17045: AO353_17045 - 30S ribosomal protein S3, at 3,768,967 to 3,769,203
_17045
Position (kb)
3767
3768
3769 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.353 kb on + strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.354 kb on - strand, within AO353_17030 at 3766.355 kb on + strand, within AO353_17030 at 3766.355 kb on + strand, within AO353_17030 at 3766.356 kb on - strand, within AO353_17030 at 3766.356 kb on - strand, within AO353_17030 at 3766.356 kb on - strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.440 kb on + strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.441 kb on - strand, within AO353_17030 at 3766.727 kb on + strand, within AO353_17030 at 3766.728 kb on - strand, within AO353_17030 at 3766.728 kb on - strand, within AO353_17030 at 3766.782 kb on + strand, within AO353_17030 at 3766.782 kb on + strand, within AO353_17030 at 3766.782 kb on + strand, within AO353_17030 at 3766.782 kb on + strand, within AO353_17030 at 3766.782 kb on + strand, within AO353_17030 at 3766.783 kb on - strand, within AO353_17030 at 3766.783 kb on - strand, within AO353_17030 at 3766.783 kb on - strand, within AO353_17030 at 3766.783 kb on - strand, within AO353_17030 at 3766.783 kb on - strand, within AO353_17030 at 3766.783 kb on - strand, within AO353_17030 at 3766.870 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.901 kb on + strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.902 kb on - strand, within AO353_17030 at 3766.921 kb on + strand, within AO353_17030 at 3766.921 kb on + strand, within AO353_17030 at 3766.922 kb on - strand, within AO353_17030 at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.046 kb on + strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.047 kb on - strand at 3767.110 kb on + strand at 3767.111 kb on - strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.175 kb on + strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.176 kb on - strand at 3767.177 kb on + strand at 3767.177 kb on + strand at 3767.177 kb on + strand at 3767.177 kb on + strand at 3767.177 kb on + strand at 3767.178 kb on - strand at 3767.178 kb on - strand at 3767.178 kb on - strand at 3767.178 kb on - strand at 3767.197 kb on + strand at 3767.200 kb on - strand at 3767.200 kb on - strand at 3767.200 kb on - strand at 3767.226 kb on + strand at 3767.226 kb on + strand at 3767.226 kb on + strand at 3767.226 kb on + strand at 3767.226 kb on + strand at 3767.226 kb on + strand at 3767.227 kb on - strand at 3767.227 kb on - strand at 3767.227 kb on - strand at 3767.268 kb on + strand at 3767.269 kb on - strand at 3767.618 kb on + strand, within AO353_17035 at 3767.618 kb on + strand, within AO353_17035 at 3767.619 kb on - strand, within AO353_17035 at 3767.619 kb on - strand, within AO353_17035 at 3767.656 kb on + strand, within AO353_17035 at 3767.694 kb on + strand, within AO353_17035 at 3767.695 kb on - strand, within AO353_17035 at 3767.814 kb on + strand, within AO353_17035 at 3767.815 kb on - strand, within AO353_17035 at 3767.815 kb on - strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.056 kb on + strand, within AO353_17035 at 3768.057 kb on - strand, within AO353_17035 at 3768.057 kb on - strand, within AO353_17035 at 3768.057 kb on - strand, within AO353_17035 at 3768.272 kb on + strand at 3768.313 kb on + strand at 3768.980 kb on + strand at 3768.980 kb on + strand at 3768.980 kb on + strand at 3769.030 kb on - strand, within AO353_17045 at 3769.030 kb on - strand, within AO353_17045 at 3769.030 kb on - strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.142 kb on + strand, within AO353_17045 at 3769.143 kb on - strand, within AO353_17045 at 3769.143 kb on - strand, within AO353_17045 at 3769.143 kb on - strand, within AO353_17045 at 3769.143 kb on - strand, within AO353_17045 at 3769.160 kb on + strand, within AO353_17045 at 3769.160 kb on + strand, within AO353_17045 at 3769.160 kb on + strand, within AO353_17045 at 3769.160 kb on + strand, within AO353_17045 at 3769.160 kb on + strand, within AO353_17045 at 3769.161 kb on - strand, within AO353_17045 at 3769.161 kb on - strand, within AO353_17045 at 3769.161 kb on - strand, within AO353_17045 at 3769.196 kb on + strand at 3769.196 kb on + strand at 3769.196 kb on + strand at 3769.196 kb on + strand at 3769.196 kb on + strand at 3769.197 kb on - strand at 3769.197 kb on - strand at 3769.197 kb on - strand at 3769.197 kb on - strand at 3769.197 kb on - strand at 3769.197 kb on - strand at 3769.197 kb on - strand at 3769.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 3,766,353 + AO353_17030 0.34 -1.4 3,766,353 + AO353_17030 0.34 -1.1 3,766,353 + AO353_17030 0.34 -0.7 3,766,353 + AO353_17030 0.34 -1.2 3,766,353 + AO353_17030 0.34 +0.9 3,766,353 + AO353_17030 0.34 +1.2 3,766,353 + AO353_17030 0.34 -1.4 3,766,353 + AO353_17030 0.34 +1.1 3,766,353 + AO353_17030 0.34 -1.1 3,766,353 + AO353_17030 0.34 +0.1 3,766,354 - AO353_17030 0.34 -1.6 3,766,354 - AO353_17030 0.34 +0.9 3,766,354 - AO353_17030 0.34 +0.9 3,766,354 - AO353_17030 0.34 +0.6 3,766,354 - AO353_17030 0.34 +0.8 3,766,354 - AO353_17030 0.34 -0.5 3,766,354 - AO353_17030 0.34 -1.3 3,766,354 - AO353_17030 0.34 -1.1 3,766,354 - AO353_17030 0.34 -2.1 3,766,354 - AO353_17030 0.34 -2.0 3,766,354 - AO353_17030 0.34 -0.3 3,766,354 - AO353_17030 0.34 +0.9 3,766,354 - AO353_17030 0.34 +0.2 3,766,354 - AO353_17030 0.34 -0.6 3,766,354 - AO353_17030 0.34 +0.3 3,766,355 + AO353_17030 0.34 -0.6 3,766,355 + AO353_17030 0.34 +1.7 3,766,356 - AO353_17030 0.35 -0.9 3,766,356 - AO353_17030 0.35 -0.6 3,766,356 - AO353_17030 0.35 -0.0 3,766,440 + AO353_17030 0.42 +0.3 3,766,440 + AO353_17030 0.42 -0.6 3,766,440 + AO353_17030 0.42 +0.3 3,766,440 + AO353_17030 0.42 -1.4 3,766,440 + AO353_17030 0.42 +0.9 3,766,440 + AO353_17030 0.42 -1.3 3,766,440 + AO353_17030 0.42 -0.5 3,766,441 - AO353_17030 0.42 -1.0 3,766,441 - AO353_17030 0.42 -0.7 3,766,441 - AO353_17030 0.42 -0.3 3,766,441 - AO353_17030 0.42 -0.6 3,766,441 - AO353_17030 0.42 -0.5 3,766,441 - AO353_17030 0.42 +0.2 3,766,441 - AO353_17030 0.42 +0.0 3,766,727 + AO353_17030 0.67 +0.9 3,766,728 - AO353_17030 0.67 -1.3 3,766,728 - AO353_17030 0.67 -2.3 3,766,782 + AO353_17030 0.72 -1.1 3,766,782 + AO353_17030 0.72 -0.0 3,766,782 + AO353_17030 0.72 -0.6 3,766,782 + AO353_17030 0.72 -1.6 3,766,782 + AO353_17030 0.72 -0.1 3,766,783 - AO353_17030 0.72 +0.9 3,766,783 - AO353_17030 0.72 +0.0 3,766,783 - AO353_17030 0.72 -2.0 3,766,783 - AO353_17030 0.72 -2.0 3,766,783 - AO353_17030 0.72 -2.7 3,766,783 - AO353_17030 0.72 -2.6 3,766,870 + AO353_17030 0.79 -0.1 3,766,901 + AO353_17030 0.82 -2.7 3,766,901 + AO353_17030 0.82 -0.1 3,766,901 + AO353_17030 0.82 +0.0 3,766,901 + AO353_17030 0.82 -0.4 3,766,901 + AO353_17030 0.82 -0.6 3,766,901 + AO353_17030 0.82 -0.5 3,766,901 + AO353_17030 0.82 -0.3 3,766,901 + AO353_17030 0.82 -0.2 3,766,901 + AO353_17030 0.82 +0.4 3,766,901 + AO353_17030 0.82 +0.8 3,766,901 + AO353_17030 0.82 -0.8 3,766,901 + AO353_17030 0.82 -1.6 3,766,901 + AO353_17030 0.82 -0.6 3,766,901 + AO353_17030 0.82 -1.5 3,766,902 - AO353_17030 0.82 -2.0 3,766,902 - AO353_17030 0.82 -0.6 3,766,902 - AO353_17030 0.82 -0.6 3,766,902 - AO353_17030 0.82 -0.7 3,766,902 - AO353_17030 0.82 -1.2 3,766,902 - AO353_17030 0.82 -0.6 3,766,902 - AO353_17030 0.82 -2.0 3,766,902 - AO353_17030 0.82 -1.4 3,766,902 - AO353_17030 0.82 -0.1 3,766,902 - AO353_17030 0.82 -1.8 3,766,902 - AO353_17030 0.82 -0.8 3,766,902 - AO353_17030 0.82 -1.4 3,766,921 + AO353_17030 0.84 +0.5 3,766,921 + AO353_17030 0.84 +0.1 3,766,922 - AO353_17030 0.84 -1.0 3,767,046 + +0.4 3,767,046 + +0.1 3,767,046 + -0.6 3,767,046 + +0.5 3,767,046 + +1.4 3,767,046 + +0.5 3,767,046 + +0.2 3,767,046 + -0.7 3,767,046 + -0.7 3,767,046 + -1.3 3,767,046 + +0.9 3,767,046 + +0.4 3,767,046 + -0.9 3,767,046 + +1.1 3,767,046 + -0.3 3,767,046 + -1.4 3,767,046 + +0.3 3,767,046 + -1.1 3,767,046 + -0.1 3,767,046 + +0.2 3,767,046 + -0.6 3,767,047 - -3.9 3,767,047 - -2.0 3,767,047 - -2.3 3,767,047 - -2.3 3,767,047 - +1.4 3,767,047 - +0.3 3,767,047 - +0.3 3,767,047 - -2.1 3,767,047 - -2.3 3,767,047 - -2.1 3,767,047 - -0.7 3,767,047 - -1.6 3,767,047 - +0.7 3,767,047 - -1.7 3,767,047 - -1.4 3,767,047 - -2.5 3,767,047 - -2.2 3,767,110 + -0.7 3,767,111 - -0.8 3,767,175 + -1.3 3,767,175 + +0.2 3,767,175 + +1.2 3,767,175 + +0.4 3,767,175 + -0.6 3,767,175 + -0.2 3,767,175 + -2.5 3,767,175 + +1.2 3,767,176 - -2.2 3,767,176 - -1.6 3,767,176 - -2.7 3,767,176 - +0.6 3,767,176 - -1.4 3,767,176 - -2.5 3,767,176 - -0.6 3,767,176 - -2.8 3,767,176 - -1.5 3,767,176 - -1.4 3,767,176 - -2.3 3,767,177 + -0.5 3,767,177 + -2.0 3,767,177 + +0.3 3,767,177 + -1.4 3,767,177 + -2.0 3,767,178 - -2.7 3,767,178 - -0.6 3,767,178 - -0.9 3,767,178 - -2.4 3,767,197 + -0.6 3,767,200 - -1.7 3,767,200 - -1.6 3,767,200 - +0.1 3,767,226 + +0.9 3,767,226 + -1.6 3,767,226 + -0.2 3,767,226 + -1.2 3,767,226 + +0.6 3,767,226 + -0.3 3,767,227 - -1.4 3,767,227 - -0.5 3,767,227 - -3.6 3,767,268 + -2.7 3,767,269 - -2.5 3,767,618 + AO353_17035 0.36 -1.4 3,767,618 + AO353_17035 0.36 -2.3 3,767,619 - AO353_17035 0.36 -2.0 3,767,619 - AO353_17035 0.36 -1.9 3,767,656 + AO353_17035 0.40 -0.9 3,767,694 + AO353_17035 0.43 -2.9 3,767,695 - AO353_17035 0.43 -1.6 3,767,814 + AO353_17035 0.55 -0.6 3,767,815 - AO353_17035 0.55 -1.7 3,767,815 - AO353_17035 0.55 -1.6 3,768,056 + AO353_17035 0.79 -0.9 3,768,056 + AO353_17035 0.79 -3.0 3,768,056 + AO353_17035 0.79 +0.4 3,768,056 + AO353_17035 0.79 -2.6 3,768,056 + AO353_17035 0.79 -1.2 3,768,056 + AO353_17035 0.79 -1.7 3,768,056 + AO353_17035 0.79 -2.3 3,768,057 - AO353_17035 0.79 -2.5 3,768,057 - AO353_17035 0.79 -1.6 3,768,057 - AO353_17035 0.79 -2.4 3,768,272 + -0.8 3,768,313 + -2.2 3,768,980 + +0.3 3,768,980 + -0.9 3,768,980 + +1.2 3,769,030 - AO353_17045 0.27 -0.0 3,769,030 - AO353_17045 0.27 +0.1 3,769,030 - AO353_17045 0.27 -0.9 3,769,142 + AO353_17045 0.74 -0.1 3,769,142 + AO353_17045 0.74 +0.7 3,769,142 + AO353_17045 0.74 -0.1 3,769,142 + AO353_17045 0.74 +0.4 3,769,142 + AO353_17045 0.74 -0.4 3,769,142 + AO353_17045 0.74 +1.2 3,769,142 + AO353_17045 0.74 +1.6 3,769,142 + AO353_17045 0.74 +2.3 3,769,142 + AO353_17045 0.74 +0.0 3,769,143 - AO353_17045 0.74 +0.9 3,769,143 - AO353_17045 0.74 +0.2 3,769,143 - AO353_17045 0.74 +0.4 3,769,143 - AO353_17045 0.74 -1.8 3,769,160 + AO353_17045 0.81 -0.4 3,769,160 + AO353_17045 0.81 +0.7 3,769,160 + AO353_17045 0.81 +0.5 3,769,160 + AO353_17045 0.81 -0.1 3,769,160 + AO353_17045 0.81 +0.1 3,769,161 - AO353_17045 0.82 +1.9 3,769,161 - AO353_17045 0.82 +0.7 3,769,161 - AO353_17045 0.82 -1.9 3,769,196 + -0.5 3,769,196 + -1.4 3,769,196 + -0.3 3,769,196 + -1.7 3,769,196 + -0.1 3,769,197 - +0.7 3,769,197 - +1.4 3,769,197 - +1.3 3,769,197 - -1.6 3,769,197 - -0.2 3,769,197 - -0.6 3,769,197 - +2.1 3,769,197 - -1.7
Or see this region's nucleotide sequence