Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03700 and AO353_03705 are separated by 182 nucleotides AO353_03705 and AO353_03710 are separated by 80 nucleotides AO353_03710 and AO353_03715 are separated by 340 nucleotides AO353_03715 and AO353_03720 are separated by 100 nucleotides
AO353_03700: AO353_03700 - hypothetical protein, at 791,567 to 792,562
_03700
AO353_03705: AO353_03705 - hypothetical protein, at 792,745 to 792,951
_03705
AO353_03710: AO353_03710 - formyltetrahydrofolate deformylase, at 793,032 to 793,880
_03710
AO353_03715: AO353_03715 - H-NS histone, at 794,221 to 794,595
_03715
AO353_03720: AO353_03720 - exonuclease I, at 794,696 to 796,123
_03720
Position (kb) 793
794 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.071 kb on + strand, within AO353_03700 at 792.072 kb on - strand, within AO353_03700 at 792.125 kb on - strand, within AO353_03700 at 792.125 kb on - strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.258 kb on - strand, within AO353_03700 at 792.259 kb on + strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.424 kb on + strand, within AO353_03700 at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.580 kb on + strand at 792.580 kb on + strand at 792.589 kb on - strand at 792.599 kb on + strand at 792.646 kb on - strand at 792.646 kb on - strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.959 kb on - strand at 793.049 kb on + strand at 793.369 kb on + strand, within AO353_03710 at 793.370 kb on - strand, within AO353_03710 at 793.370 kb on - strand, within AO353_03710 at 793.472 kb on - strand, within AO353_03710 at 793.612 kb on - strand, within AO353_03710 at 793.612 kb on - strand, within AO353_03710 at 793.826 kb on + strand at 793.835 kb on + strand at 793.920 kb on - strand at 793.965 kb on + strand at 794.014 kb on + strand at 794.014 kb on + strand at 794.014 kb on + strand at 794.015 kb on - strand at 794.015 kb on - strand at 794.020 kb on - strand at 794.031 kb on - strand at 794.031 kb on - strand at 794.052 kb on + strand at 794.052 kb on + strand at 794.052 kb on + strand at 794.124 kb on - strand at 794.147 kb on + strand at 794.168 kb on + strand at 794.171 kb on + strand at 794.172 kb on - strand at 794.184 kb on + strand at 794.184 kb on + strand at 794.208 kb on + strand at 794.208 kb on + strand at 794.208 kb on + strand at 794.208 kb on + strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.213 kb on + strand at 794.214 kb on - strand at 794.259 kb on + strand, within AO353_03715 at 794.259 kb on + strand, within AO353_03715 at 794.412 kb on + strand, within AO353_03715 at 794.473 kb on + strand, within AO353_03715 at 794.679 kb on + strand at 794.679 kb on + strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.685 kb on + strand at 794.685 kb on + strand at 794.686 kb on - strand at 794.686 kb on - strand at 794.717 kb on + strand at 794.718 kb on - strand at 794.730 kb on + strand at 794.731 kb on - strand at 794.751 kb on - strand at 794.751 kb on - strand at 794.751 kb on - strand at 794.751 kb on - strand at 794.770 kb on + strand at 794.770 kb on + strand at 794.777 kb on - strand at 794.777 kb on - strand at 794.804 kb on - strand at 794.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 792,071 + AO353_03700 0.51 +0.0 792,072 - AO353_03700 0.51 -0.5 792,125 - AO353_03700 0.56 +0.9 792,125 - AO353_03700 0.56 -1.7 792,222 + AO353_03700 0.66 +0.9 792,222 + AO353_03700 0.66 -0.3 792,222 + AO353_03700 0.66 +0.9 792,223 - AO353_03700 0.66 -0.8 792,223 - AO353_03700 0.66 -1.5 792,223 - AO353_03700 0.66 -1.6 792,223 - AO353_03700 0.66 +1.3 792,258 - AO353_03700 0.69 +0.9 792,259 + AO353_03700 0.69 +0.8 792,260 - AO353_03700 0.70 +0.6 792,260 - AO353_03700 0.70 -1.4 792,260 - AO353_03700 0.70 +0.1 792,260 - AO353_03700 0.70 +0.5 792,269 + AO353_03700 0.70 +0.7 792,269 + AO353_03700 0.70 +0.1 792,269 + AO353_03700 0.70 +0.2 792,270 - AO353_03700 0.71 -0.7 792,270 - AO353_03700 0.71 +0.0 792,270 - AO353_03700 0.71 +2.1 792,270 - AO353_03700 0.71 +0.7 792,424 + AO353_03700 0.86 -1.4 792,470 + -0.5 792,470 + -2.0 792,470 + +0.5 792,470 + -0.1 792,470 + +0.1 792,470 + -0.0 792,471 - +0.6 792,471 - -1.1 792,471 - +0.3 792,471 - -1.4 792,471 - -0.2 792,471 - -1.1 792,471 - -0.7 792,471 - +0.0 792,471 - -0.4 792,471 - -2.2 792,473 + +0.5 792,473 + -0.5 792,473 + +1.5 792,473 + -1.9 792,473 + +0.1 792,473 + +1.5 792,473 + -0.5 792,473 + -0.6 792,473 + +0.2 792,473 + +0.7 792,474 - -0.5 792,474 - +0.0 792,474 - +0.5 792,474 - +2.1 792,479 + -0.7 792,479 + -1.6 792,479 + -2.6 792,479 + +0.9 792,479 + +0.1 792,479 + -0.5 792,479 + +0.2 792,480 - +0.3 792,480 - +0.4 792,480 - -1.1 792,480 - -0.8 792,480 - +0.8 792,580 + +0.6 792,580 + -0.1 792,589 - -1.1 792,599 + -1.2 792,646 - -0.9 792,646 - +1.1 792,753 + -1.4 792,753 + +1.5 792,753 + -1.4 792,753 + +0.8 792,753 + -2.4 792,753 + +1.2 792,753 + +0.1 792,753 + +0.3 792,753 + -0.9 792,753 + -0.1 792,753 + -1.5 792,753 + -1.0 792,754 - -0.4 792,754 - -0.2 792,754 - +0.5 792,754 - -0.5 792,754 - +0.6 792,754 - +0.4 792,754 - -1.0 792,754 - +0.5 792,754 - +0.7 792,754 - +0.1 792,959 - -2.4 793,049 + -0.5 793,369 + AO353_03710 0.40 -1.6 793,370 - AO353_03710 0.40 -0.9 793,370 - AO353_03710 0.40 -0.9 793,472 - AO353_03710 0.52 +0.5 793,612 - AO353_03710 0.68 +0.6 793,612 - AO353_03710 0.68 +1.0 793,826 + -2.1 793,835 + +0.5 793,920 - -0.4 793,965 + -0.7 794,014 + +0.8 794,014 + -1.6 794,014 + -0.5 794,015 - -1.5 794,015 - +0.1 794,020 - -0.9 794,031 - -1.1 794,031 - -1.1 794,052 + -2.2 794,052 + -1.1 794,052 + -1.0 794,124 - +0.1 794,147 + -0.3 794,168 + +0.7 794,171 + -1.5 794,172 - -0.9 794,184 + -0.4 794,184 + -1.1 794,208 + -0.5 794,208 + -0.5 794,208 + -1.4 794,208 + -0.5 794,209 - -2.0 794,209 - -0.3 794,209 - -1.9 794,209 - +0.6 794,209 - -1.9 794,209 - -0.5 794,209 - +0.1 794,213 + +0.7 794,214 - -0.1 794,259 + AO353_03715 0.10 -0.5 794,259 + AO353_03715 0.10 +0.6 794,412 + AO353_03715 0.51 -1.1 794,473 + AO353_03715 0.67 -0.5 794,679 + -0.9 794,679 + -0.4 794,680 - -0.2 794,680 - -0.3 794,680 - +0.5 794,680 - +0.4 794,680 - -0.1 794,680 - +0.9 794,680 - -0.3 794,680 - -1.0 794,680 - +0.0 794,685 + -0.7 794,685 + -0.0 794,686 - -1.1 794,686 - -0.5 794,717 + -0.7 794,718 - -0.7 794,730 + -2.6 794,731 - -0.7 794,751 - +0.6 794,751 - +0.9 794,751 - -0.1 794,751 - -1.5 794,770 + -1.1 794,770 + +1.0 794,777 - -0.1 794,777 - -0.7 794,804 - -1.9 794,804 - -1.8
Or see this region's nucleotide sequence