Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03580 and AO353_03585 are separated by 0 nucleotides AO353_03585 and AO353_03590 are separated by 118 nucleotides AO353_03590 and AO353_03595 are separated by 203 nucleotides
AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933
_03580
AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542
_03585
AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185
_03590
AO353_03595: AO353_03595 - hypothetical protein, at 767,389 to 768,135
_03595
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.954 kb on + strand at 764.954 kb on + strand at 764.955 kb on - strand at 764.955 kb on - strand at 764.997 kb on + strand, within AO353_03580 at 764.999 kb on + strand, within AO353_03580 at 764.999 kb on + strand, within AO353_03580 at 765.198 kb on + strand, within AO353_03580 at 765.198 kb on + strand, within AO353_03580 at 765.199 kb on - strand, within AO353_03580 at 765.205 kb on - strand, within AO353_03580 at 765.205 kb on - strand, within AO353_03580 at 765.274 kb on - strand, within AO353_03580 at 765.376 kb on - strand, within AO353_03580 at 765.548 kb on + strand, within AO353_03580 at 765.836 kb on + strand at 765.837 kb on - strand at 765.935 kb on + strand at 765.936 kb on - strand at 765.936 kb on - strand at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.583 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.655 kb on - strand at 766.831 kb on + strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 767.080 kb on + strand, within AO353_03590 at 767.103 kb on + strand, within AO353_03590 at 767.103 kb on + strand, within AO353_03590 at 767.104 kb on - strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.177 kb on + strand at 767.178 kb on - strand at 767.186 kb on - strand at 767.201 kb on - strand at 767.296 kb on + strand at 767.297 kb on - strand at 767.435 kb on + strand at 767.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 764,954 + -2.5 764,954 + +0.5 764,955 - -1.1 764,955 - +0.5 764,997 + AO353_03580 0.12 -1.9 764,999 + AO353_03580 0.12 -2.1 764,999 + AO353_03580 0.12 -0.5 765,198 + AO353_03580 0.31 -1.4 765,198 + AO353_03580 0.31 -2.0 765,199 - AO353_03580 0.31 -0.7 765,205 - AO353_03580 0.31 -1.7 765,205 - AO353_03580 0.31 -0.9 765,274 - AO353_03580 0.38 -0.1 765,376 - AO353_03580 0.47 -1.1 765,548 + AO353_03580 0.64 -2.4 765,836 + -2.5 765,837 - -0.4 765,935 + +2.0 765,936 - +1.0 765,936 - -0.4 766,480 + AO353_03585 0.90 -0.4 766,480 + AO353_03585 0.90 -2.4 766,480 + AO353_03585 0.90 -1.9 766,480 + AO353_03585 0.90 -2.5 766,481 - AO353_03585 0.90 -1.5 766,481 - AO353_03585 0.90 -0.1 766,481 - AO353_03585 0.90 -0.1 766,583 + -1.0 766,654 + -2.1 766,654 + -1.9 766,654 + +0.3 766,655 - +1.1 766,831 + AO353_03590 0.32 -1.1 766,882 - AO353_03590 0.42 -0.4 766,882 - AO353_03590 0.42 -1.9 767,080 + AO353_03590 0.80 -2.9 767,103 + AO353_03590 0.84 -2.4 767,103 + AO353_03590 0.84 -0.1 767,104 - AO353_03590 0.84 +0.1 767,129 + AO353_03590 0.89 -1.5 767,129 + AO353_03590 0.89 +1.5 767,129 + AO353_03590 0.89 -2.0 767,129 + AO353_03590 0.89 -2.2 767,177 + +0.0 767,178 - -0.4 767,186 - -0.3 767,201 - +0.4 767,296 + +0.5 767,297 - +0.6 767,435 + +0.0 767,435 + -1.4
Or see this region's nucleotide sequence