Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02050 and AO353_02055 are separated by 121 nucleotides AO353_02055 and AO353_02060 overlap by 4 nucleotides AO353_02060 and AO353_02065 are separated by 28 nucleotides
AO353_02050: AO353_02050 - 30S ribosomal protein S1, at 435,252 to 436,943
_02050
AO353_02055: AO353_02055 - cytidylate kinase, at 437,065 to 437,754
_02055
AO353_02060: AO353_02060 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 437,751 to 439,958
_02060
AO353_02065: AO353_02065 - aspartate aminotransferase, at 439,987 to 441,099
_02065
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 437.037 kb on - strand at 437.037 kb on - strand at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.215 kb on - strand, within AO353_02060 at 439.215 kb on - strand, within AO353_02060 at 439.353 kb on - strand, within AO353_02060 at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.959 kb on - strand at 439.959 kb on - strand at 439.959 kb on - strand at 439.959 kb on - strand at 439.959 kb on - strand at 440.081 kb on + strand at 440.081 kb on + strand at 440.081 kb on + strand at 440.082 kb on - strand at 440.082 kb on - strand at 440.082 kb on - strand at 440.267 kb on + strand, within AO353_02065 at 440.267 kb on + strand, within AO353_02065 at 440.267 kb on + strand, within AO353_02065 at 440.268 kb on - strand, within AO353_02065 at 440.268 kb on - strand, within AO353_02065 at 440.379 kb on - strand, within AO353_02065 at 440.405 kb on + strand, within AO353_02065 at 440.405 kb on + strand, within AO353_02065 at 440.406 kb on - strand, within AO353_02065 at 440.492 kb on + strand, within AO353_02065 at 440.493 kb on - strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.774 kb on + strand, within AO353_02065 at 440.774 kb on + strand, within AO353_02065 at 440.774 kb on + strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 437,037 - -1.3 437,037 - +0.2 439,085 - AO353_02060 0.60 +0.0 439,085 - AO353_02060 0.60 -1.8 439,085 - AO353_02060 0.60 -1.0 439,085 - AO353_02060 0.60 +0.6 439,085 - AO353_02060 0.60 -1.7 439,085 - AO353_02060 0.60 -1.2 439,215 - AO353_02060 0.66 -0.6 439,215 - AO353_02060 0.66 -1.0 439,353 - AO353_02060 0.73 -1.2 439,958 + +0.6 439,958 + -0.8 439,958 + -1.2 439,958 + -1.1 439,958 + -1.0 439,958 + +1.1 439,958 + -0.4 439,959 - -0.4 439,959 - +0.5 439,959 - +1.0 439,959 - -0.1 439,959 - +0.6 440,081 + -0.2 440,081 + +1.9 440,081 + +1.3 440,082 - -0.1 440,082 - +1.6 440,082 - +0.8 440,267 + AO353_02065 0.25 +0.6 440,267 + AO353_02065 0.25 -1.4 440,267 + AO353_02065 0.25 -0.7 440,268 - AO353_02065 0.25 +0.9 440,268 - AO353_02065 0.25 +0.2 440,379 - AO353_02065 0.35 +0.8 440,405 + AO353_02065 0.38 +0.3 440,405 + AO353_02065 0.38 -1.4 440,406 - AO353_02065 0.38 -1.1 440,492 + AO353_02065 0.45 -1.2 440,493 - AO353_02065 0.45 +0.1 440,501 + AO353_02065 0.46 +0.6 440,501 + AO353_02065 0.46 -0.7 440,501 + AO353_02065 0.46 -2.2 440,501 + AO353_02065 0.46 +1.2 440,501 + AO353_02065 0.46 -0.2 440,501 + AO353_02065 0.46 +0.3 440,501 + AO353_02065 0.46 +0.3 440,502 - AO353_02065 0.46 +0.8 440,502 - AO353_02065 0.46 +1.0 440,502 - AO353_02065 0.46 +1.5 440,502 - AO353_02065 0.46 +0.2 440,502 - AO353_02065 0.46 -1.0 440,502 - AO353_02065 0.46 +1.7 440,502 - AO353_02065 0.46 -0.5 440,502 - AO353_02065 0.46 +0.1 440,502 - AO353_02065 0.46 +1.5 440,502 - AO353_02065 0.46 +2.9 440,502 - AO353_02065 0.46 -0.7 440,502 - AO353_02065 0.46 +0.4 440,774 + AO353_02065 0.71 -0.9 440,774 + AO353_02065 0.71 -0.4 440,774 + AO353_02065 0.71 -0.7 440,775 - AO353_02065 0.71 -0.7 440,775 - AO353_02065 0.71 -0.8 440,775 - AO353_02065 0.71 +0.1 440,775 - AO353_02065 0.71 -0.5
Or see this region's nucleotide sequence