Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02020 and AO353_02025 are separated by 98 nucleotides AO353_02025 and AO353_02030 are separated by 831 nucleotides
AO353_02020: AO353_02020 - hypothetical protein, at 430,504 to 431,469
_02020
AO353_02025: AO353_02025 - mannose-1-phosphate guanyltransferase, at 431,568 to 433,028
_02025
AO353_02030: AO353_02030 - hypothetical protein, at 433,860 to 434,039
_02030
Position (kb) 431
432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.632 kb on + strand, within AO353_02020 at 430.632 kb on + strand, within AO353_02020 at 430.702 kb on - strand, within AO353_02020 at 430.748 kb on - strand, within AO353_02020 at 430.786 kb on - strand, within AO353_02020 at 430.862 kb on + strand, within AO353_02020 at 430.862 kb on + strand, within AO353_02020 at 430.863 kb on - strand, within AO353_02020 at 430.951 kb on - strand, within AO353_02020 at 431.064 kb on - strand, within AO353_02020 at 431.064 kb on - strand, within AO353_02020 at 431.133 kb on + strand, within AO353_02020 at 431.159 kb on + strand, within AO353_02020 at 431.159 kb on + strand, within AO353_02020 at 431.189 kb on - strand, within AO353_02020 at 431.189 kb on - strand, within AO353_02020 at 431.189 kb on - strand, within AO353_02020 at 431.231 kb on + strand, within AO353_02020 at 431.231 kb on + strand, within AO353_02020 at 431.232 kb on - strand, within AO353_02020 at 431.232 kb on - strand, within AO353_02020 at 431.375 kb on + strand at 431.407 kb on - strand at 431.452 kb on - strand at 431.452 kb on - strand at 431.455 kb on + strand at 431.456 kb on - strand at 431.495 kb on + strand at 431.522 kb on - strand at 431.549 kb on - strand at 431.577 kb on - strand at 431.580 kb on - strand at 431.596 kb on - strand at 431.606 kb on - strand at 431.628 kb on - strand at 431.670 kb on + strand at 431.671 kb on - strand at 431.671 kb on - strand at 431.709 kb on - strand at 431.861 kb on + strand, within AO353_02025 at 431.902 kb on + strand, within AO353_02025 at 431.902 kb on + strand, within AO353_02025 at 431.902 kb on + strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 432.090 kb on + strand, within AO353_02025 at 432.090 kb on + strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.117 kb on + strand, within AO353_02025 at 432.117 kb on + strand, within AO353_02025 at 432.254 kb on - strand, within AO353_02025 at 432.254 kb on - strand, within AO353_02025 at 432.313 kb on + strand, within AO353_02025 at 432.313 kb on + strand, within AO353_02025 at 432.314 kb on - strand, within AO353_02025 at 432.330 kb on - strand, within AO353_02025 at 432.369 kb on + strand, within AO353_02025 at 432.370 kb on - strand, within AO353_02025 at 432.370 kb on - strand, within AO353_02025 at 432.442 kb on + strand, within AO353_02025 at 432.445 kb on + strand, within AO353_02025 at 432.445 kb on + strand, within AO353_02025 at 432.445 kb on + strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.463 kb on + strand, within AO353_02025 at 432.464 kb on - strand, within AO353_02025 at 432.553 kb on + strand, within AO353_02025 at 432.554 kb on - strand, within AO353_02025 at 432.623 kb on + strand, within AO353_02025 at 432.624 kb on - strand, within AO353_02025 at 432.624 kb on - strand, within AO353_02025 at 432.636 kb on + strand, within AO353_02025 at 432.637 kb on - strand, within AO353_02025 at 432.695 kb on + strand, within AO353_02025 at 432.695 kb on + strand, within AO353_02025 at 432.696 kb on - strand, within AO353_02025 at 432.758 kb on + strand, within AO353_02025 at 432.761 kb on + strand, within AO353_02025 at 432.762 kb on - strand, within AO353_02025 at 432.762 kb on - strand, within AO353_02025 at 432.783 kb on - strand, within AO353_02025 at 432.783 kb on - strand, within AO353_02025 at 432.855 kb on - strand, within AO353_02025 at 432.864 kb on - strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.874 kb on - strand, within AO353_02025 at 432.874 kb on - strand, within AO353_02025 at 432.918 kb on + strand at 432.918 kb on + strand at 432.919 kb on - strand at 433.042 kb on - strand at 433.064 kb on - strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.068 kb on - strand at 433.068 kb on - strand at 433.068 kb on - strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.088 kb on - strand at 433.088 kb on - strand at 433.089 kb on + strand at 433.089 kb on + strand at 433.089 kb on + strand at 433.090 kb on - strand at 433.172 kb on - strand at 433.189 kb on - strand at 433.198 kb on + strand at 433.198 kb on + strand at 433.198 kb on + strand at 433.199 kb on - strand at 433.199 kb on - strand at 433.216 kb on + strand at 433.217 kb on - strand at 433.217 kb on - strand at 433.217 kb on - strand at 433.255 kb on + strand at 433.255 kb on + strand at 433.255 kb on + strand at 433.256 kb on - strand at 433.261 kb on + strand at 433.261 kb on + strand at 433.261 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.451 kb on + strand at 433.451 kb on + strand at 433.510 kb on + strand at 433.511 kb on - strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.628 kb on + strand at 433.628 kb on + strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.631 kb on - strand at 433.737 kb on + strand at 433.738 kb on - strand at 433.738 kb on - strand at 433.752 kb on + strand at 433.766 kb on + strand at 433.853 kb on + strand at 433.853 kb on + strand at 433.854 kb on - strand at 433.858 kb on + strand at 433.859 kb on - strand at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.961 kb on + strand, within AO353_02030 at 434.005 kb on + strand, within AO353_02030 at 434.020 kb on + strand, within AO353_02030 at 434.021 kb on - strand, within AO353_02030
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 430,632 + AO353_02020 0.13 +0.5 430,632 + AO353_02020 0.13 -2.0 430,702 - AO353_02020 0.20 -1.0 430,748 - AO353_02020 0.25 -0.7 430,786 - AO353_02020 0.29 +1.3 430,862 + AO353_02020 0.37 -0.5 430,862 + AO353_02020 0.37 -1.0 430,863 - AO353_02020 0.37 -1.0 430,951 - AO353_02020 0.46 -1.8 431,064 - AO353_02020 0.58 -1.8 431,064 - AO353_02020 0.58 -1.7 431,133 + AO353_02020 0.65 -1.2 431,159 + AO353_02020 0.68 -2.0 431,159 + AO353_02020 0.68 -1.6 431,189 - AO353_02020 0.71 -0.7 431,189 - AO353_02020 0.71 -1.8 431,189 - AO353_02020 0.71 -2.2 431,231 + AO353_02020 0.75 -1.2 431,231 + AO353_02020 0.75 -0.7 431,232 - AO353_02020 0.75 -0.4 431,232 - AO353_02020 0.75 -1.8 431,375 + -0.1 431,407 - -2.8 431,452 - -1.5 431,452 - -0.5 431,455 + -3.4 431,456 - -2.6 431,495 + -0.5 431,522 - -0.0 431,549 - -2.2 431,577 - +0.4 431,580 - +0.9 431,596 - +1.2 431,606 - -0.7 431,628 - +0.3 431,670 + +0.3 431,671 - -1.2 431,671 - +0.7 431,709 - -2.8 431,861 + AO353_02025 0.20 +0.9 431,902 + AO353_02025 0.23 -2.5 431,902 + AO353_02025 0.23 -0.7 431,902 + AO353_02025 0.23 +0.8 431,903 - AO353_02025 0.23 -1.0 431,903 - AO353_02025 0.23 -1.0 431,903 - AO353_02025 0.23 -1.2 431,903 - AO353_02025 0.23 -0.2 431,903 - AO353_02025 0.23 -0.7 432,090 + AO353_02025 0.36 -0.0 432,090 + AO353_02025 0.36 -1.8 432,091 - AO353_02025 0.36 -3.4 432,091 - AO353_02025 0.36 -3.0 432,091 - AO353_02025 0.36 -1.2 432,091 - AO353_02025 0.36 +0.3 432,091 - AO353_02025 0.36 -2.2 432,091 - AO353_02025 0.36 -2.8 432,094 + AO353_02025 0.36 -2.1 432,094 + AO353_02025 0.36 -1.7 432,094 + AO353_02025 0.36 -0.2 432,094 + AO353_02025 0.36 -1.2 432,094 + AO353_02025 0.36 -1.4 432,094 + AO353_02025 0.36 -1.6 432,094 + AO353_02025 0.36 -1.5 432,094 + AO353_02025 0.36 -2.4 432,094 + AO353_02025 0.36 -0.2 432,095 - AO353_02025 0.36 +0.9 432,095 - AO353_02025 0.36 +0.0 432,095 - AO353_02025 0.36 -1.8 432,095 - AO353_02025 0.36 -2.7 432,095 - AO353_02025 0.36 +0.9 432,117 + AO353_02025 0.38 -0.7 432,117 + AO353_02025 0.38 -1.4 432,254 - AO353_02025 0.47 -1.5 432,254 - AO353_02025 0.47 -1.1 432,313 + AO353_02025 0.51 -1.5 432,313 + AO353_02025 0.51 -0.4 432,314 - AO353_02025 0.51 -2.4 432,330 - AO353_02025 0.52 -1.3 432,369 + AO353_02025 0.55 -1.7 432,370 - AO353_02025 0.55 -2.1 432,370 - AO353_02025 0.55 -3.0 432,442 + AO353_02025 0.60 -3.1 432,445 + AO353_02025 0.60 -2.5 432,445 + AO353_02025 0.60 -1.5 432,445 + AO353_02025 0.60 -0.2 432,446 - AO353_02025 0.60 -1.7 432,446 - AO353_02025 0.60 -1.0 432,446 - AO353_02025 0.60 +0.9 432,446 - AO353_02025 0.60 -1.2 432,459 + AO353_02025 0.61 -0.2 432,459 + AO353_02025 0.61 -1.0 432,459 + AO353_02025 0.61 -2.6 432,459 + AO353_02025 0.61 +0.5 432,459 + AO353_02025 0.61 -1.5 432,460 - AO353_02025 0.61 -1.5 432,460 - AO353_02025 0.61 -2.5 432,460 - AO353_02025 0.61 -2.0 432,460 - AO353_02025 0.61 -1.2 432,460 - AO353_02025 0.61 -1.5 432,460 - AO353_02025 0.61 -1.2 432,460 - AO353_02025 0.61 -2.2 432,463 + AO353_02025 0.61 -2.0 432,464 - AO353_02025 0.61 -2.8 432,553 + AO353_02025 0.67 -1.8 432,554 - AO353_02025 0.67 -1.0 432,623 + AO353_02025 0.72 -2.0 432,624 - AO353_02025 0.72 -1.5 432,624 - AO353_02025 0.72 +0.0 432,636 + AO353_02025 0.73 -0.1 432,637 - AO353_02025 0.73 -2.1 432,695 + AO353_02025 0.77 -1.4 432,695 + AO353_02025 0.77 -1.4 432,696 - AO353_02025 0.77 -1.7 432,758 + AO353_02025 0.81 -1.3 432,761 + AO353_02025 0.82 -2.5 432,762 - AO353_02025 0.82 +0.6 432,762 - AO353_02025 0.82 -1.7 432,783 - AO353_02025 0.83 +2.6 432,783 - AO353_02025 0.83 -0.8 432,855 - AO353_02025 0.88 -2.0 432,864 - AO353_02025 0.89 -1.8 432,873 + AO353_02025 0.89 -1.0 432,873 + AO353_02025 0.89 +0.0 432,873 + AO353_02025 0.89 -0.7 432,873 + AO353_02025 0.89 -1.7 432,874 - AO353_02025 0.89 -1.8 432,874 - AO353_02025 0.89 -2.2 432,918 + -1.0 432,918 + -1.7 432,919 - -1.2 433,042 - -2.1 433,064 - +0.8 433,067 + -0.5 433,067 + -1.0 433,067 + -1.6 433,067 + -0.5 433,068 - +1.3 433,068 - -1.5 433,068 - -0.0 433,087 + -2.9 433,087 + -3.0 433,087 + -1.2 433,087 + -3.1 433,087 + -1.0 433,087 + -1.0 433,088 - +2.0 433,088 - +0.8 433,089 + -2.1 433,089 + -2.2 433,089 + -1.2 433,090 - -0.1 433,172 - -0.1 433,189 - -0.1 433,198 + -0.7 433,198 + -1.8 433,198 + -0.5 433,199 - -0.2 433,199 - +0.3 433,216 + -1.2 433,217 - +0.7 433,217 - -0.3 433,217 - -0.2 433,255 + +0.3 433,255 + -2.4 433,255 + -1.4 433,256 - +1.0 433,261 + -0.7 433,261 + +1.1 433,261 + -1.0 433,360 + +1.8 433,360 + -0.7 433,360 + +0.6 433,451 + -1.2 433,451 + +0.8 433,510 + -2.1 433,511 - -0.6 433,555 + -0.8 433,555 + -0.0 433,555 + -0.5 433,556 - +0.1 433,556 - +0.5 433,556 - +0.8 433,565 - +0.3 433,565 - -0.6 433,565 - -0.8 433,565 - -1.7 433,565 - +0.3 433,565 - -0.4 433,628 + -1.7 433,628 + -1.1 433,629 - +1.6 433,629 - +0.9 433,629 - -0.7 433,629 - +1.1 433,630 + +1.3 433,630 + +1.5 433,630 + +0.1 433,631 - +0.2 433,737 + +0.9 433,738 - +1.0 433,738 - +0.9 433,752 + +0.0 433,766 + +0.6 433,853 + -0.7 433,853 + +1.0 433,854 - +0.3 433,858 + +1.3 433,859 - -2.0 433,883 + AO353_02030 0.13 -0.1 433,883 + AO353_02030 0.13 +0.1 433,883 + AO353_02030 0.13 +1.5 433,883 + AO353_02030 0.13 +0.3 433,884 - AO353_02030 0.13 -1.0 433,884 - AO353_02030 0.13 -1.1 433,884 - AO353_02030 0.13 -1.0 433,884 - AO353_02030 0.13 +0.9 433,890 - AO353_02030 0.17 -0.0 433,890 - AO353_02030 0.17 +1.0 433,961 + AO353_02030 0.56 +1.1 434,005 + AO353_02030 0.81 +1.3 434,020 + AO353_02030 0.89 +0.9 434,021 - AO353_02030 0.89 +1.2
Or see this region's nucleotide sequence