Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02015

Experiment: Vancomycin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02010 and AO353_02015 overlap by 17 nucleotidesAO353_02015 and AO353_02020 are separated by 170 nucleotides AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720 _02010 AO353_02015: AO353_02015 - acetyltransferase, at 429,704 to 430,333 _02015 AO353_02020: AO353_02020 - hypothetical protein, at 430,504 to 431,469 _02020 Position (kb) 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1at 428.776 kb on + strand, within AO353_02010at 428.777 kb on - strand, within AO353_02010at 428.800 kb on - strand, within AO353_02010at 428.800 kb on - strand, within AO353_02010at 428.833 kb on + strand, within AO353_02010at 428.834 kb on - strand, within AO353_02010at 428.834 kb on - strand, within AO353_02010at 428.941 kb on - strand, within AO353_02010at 429.069 kb on + strand, within AO353_02010at 429.071 kb on + strand, within AO353_02010at 429.174 kb on + strand, within AO353_02010at 429.174 kb on + strand, within AO353_02010at 429.198 kb on - strand, within AO353_02010at 429.198 kb on - strand, within AO353_02010at 429.411 kb on + strand, within AO353_02010at 429.411 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.510 kb on + strand, within AO353_02010at 429.537 kb on - strand, within AO353_02010at 429.590 kb on + strand, within AO353_02010at 429.631 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.715 kb on + strandat 429.767 kb on - strand, within AO353_02015at 429.771 kb on + strand, within AO353_02015at 429.771 kb on + strand, within AO353_02015at 429.772 kb on - strand, within AO353_02015at 429.887 kb on + strand, within AO353_02015at 429.887 kb on + strand, within AO353_02015at 429.888 kb on - strand, within AO353_02015at 429.888 kb on - strand, within AO353_02015at 429.893 kb on + strand, within AO353_02015at 429.893 kb on + strand, within AO353_02015at 429.894 kb on - strand, within AO353_02015at 429.894 kb on - strand, within AO353_02015at 429.982 kb on + strand, within AO353_02015at 429.982 kb on + strand, within AO353_02015at 430.005 kb on - strand, within AO353_02015at 430.042 kb on + strand, within AO353_02015at 430.068 kb on + strand, within AO353_02015at 430.069 kb on - strand, within AO353_02015at 430.069 kb on - strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.072 kb on + strand, within AO353_02015at 430.073 kb on - strand, within AO353_02015at 430.073 kb on - strand, within AO353_02015at 430.082 kb on - strand, within AO353_02015at 430.094 kb on - strand, within AO353_02015at 430.159 kb on + strand, within AO353_02015at 430.254 kb on + strand, within AO353_02015at 430.275 kb on + strandat 430.275 kb on + strandat 430.275 kb on + strandat 430.275 kb on + strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.278 kb on + strandat 430.278 kb on + strandat 430.278 kb on + strandat 430.279 kb on - strandat 430.324 kb on + strandat 430.324 kb on + strandat 430.325 kb on - strandat 430.372 kb on + strandat 430.373 kb on - strandat 430.373 kb on - strandat 430.396 kb on + strandat 430.396 kb on + strandat 430.396 kb on + strandat 430.420 kb on + strandat 430.450 kb on + strandat 430.450 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.465 kb on - strandat 430.465 kb on - strandat 430.505 kb on + strandat 430.505 kb on + strandat 430.505 kb on + strandat 430.516 kb on + strandat 430.632 kb on + strand, within AO353_02020at 430.632 kb on + strand, within AO353_02020at 430.702 kb on - strand, within AO353_02020at 430.748 kb on - strand, within AO353_02020at 430.786 kb on - strand, within AO353_02020at 430.862 kb on + strand, within AO353_02020at 430.862 kb on + strand, within AO353_02020at 430.863 kb on - strand, within AO353_02020at 430.951 kb on - strand, within AO353_02020at 431.064 kb on - strand, within AO353_02020at 431.064 kb on - strand, within AO353_02020at 431.133 kb on + strand, within AO353_02020at 431.159 kb on + strand, within AO353_02020at 431.159 kb on + strand, within AO353_02020at 431.189 kb on - strand, within AO353_02020at 431.189 kb on - strand, within AO353_02020at 431.189 kb on - strand, within AO353_02020at 431.231 kb on + strand, within AO353_02020at 431.231 kb on + strand, within AO353_02020at 431.232 kb on - strand, within AO353_02020at 431.232 kb on - strand, within AO353_02020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
remove
428,776 + AO353_02010 0.24 -1.6
428,777 - AO353_02010 0.24 -0.9
428,800 - AO353_02010 0.26 -1.8
428,800 - AO353_02010 0.26 +0.6
428,833 + AO353_02010 0.29 -1.7
428,834 - AO353_02010 0.29 -2.2
428,834 - AO353_02010 0.29 -2.5
428,941 - AO353_02010 0.38 -1.8
429,069 + AO353_02010 0.48 -1.5
429,071 + AO353_02010 0.48 -1.2
429,174 + AO353_02010 0.56 -1.2
429,174 + AO353_02010 0.56 -2.2
429,198 - AO353_02010 0.58 -2.1
429,198 - AO353_02010 0.58 -0.7
429,411 + AO353_02010 0.75 -2.0
429,411 + AO353_02010 0.75 +0.6
429,508 + AO353_02010 0.83 +0.0
429,508 + AO353_02010 0.83 -2.7
429,508 + AO353_02010 0.83 -2.1
429,508 + AO353_02010 0.83 -1.1
429,510 + AO353_02010 0.83 -2.1
429,537 - AO353_02010 0.85 -1.0
429,590 + AO353_02010 0.90 -0.2
429,631 - -1.2
429,642 - -2.0
429,642 - -1.0
429,642 - -1.6
429,642 - -1.4
429,642 - -1.4
429,715 + -0.2
429,767 - AO353_02015 0.10 -1.5
429,771 + AO353_02015 0.11 -2.5
429,771 + AO353_02015 0.11 -1.5
429,772 - AO353_02015 0.11 -0.5
429,887 + AO353_02015 0.29 -2.0
429,887 + AO353_02015 0.29 -0.7
429,888 - AO353_02015 0.29 -0.2
429,888 - AO353_02015 0.29 -2.8
429,893 + AO353_02015 0.30 -1.5
429,893 + AO353_02015 0.30 -1.2
429,894 - AO353_02015 0.30 -2.5
429,894 - AO353_02015 0.30 -1.3
429,982 + AO353_02015 0.44 -2.5
429,982 + AO353_02015 0.44 -0.1
430,005 - AO353_02015 0.48 -1.5
430,042 + AO353_02015 0.54 -2.4
430,068 + AO353_02015 0.58 -0.7
430,069 - AO353_02015 0.58 -1.2
430,069 - AO353_02015 0.58 -0.6
430,070 + AO353_02015 0.58 -2.0
430,070 + AO353_02015 0.58 -1.0
430,070 + AO353_02015 0.58 -1.2
430,070 + AO353_02015 0.58 -1.1
430,070 + AO353_02015 0.58 +0.3
430,071 - AO353_02015 0.58 -0.7
430,071 - AO353_02015 0.58 -2.7
430,071 - AO353_02015 0.58 -2.2
430,071 - AO353_02015 0.58 -2.1
430,071 - AO353_02015 0.58 +0.9
430,071 - AO353_02015 0.58 -2.5
430,072 + AO353_02015 0.58 +0.3
430,073 - AO353_02015 0.59 -1.1
430,073 - AO353_02015 0.59 -0.2
430,082 - AO353_02015 0.60 +0.9
430,094 - AO353_02015 0.62 -0.6
430,159 + AO353_02015 0.72 -0.7
430,254 + AO353_02015 0.87 -2.0
430,275 + -1.7
430,275 + -1.8
430,275 + +0.3
430,275 + -1.0
430,276 - -1.4
430,276 - +0.2
430,276 - -1.0
430,276 - -2.8
430,278 + -2.1
430,278 + -1.7
430,278 + -0.7
430,279 - -1.7
430,324 + -0.2
430,324 + -0.8
430,325 - -1.1
430,372 + -2.4
430,373 - -0.5
430,373 - -1.9
430,396 + -0.2
430,396 + -1.9
430,396 + -1.8
430,420 + -0.7
430,450 + -1.8
430,450 + -2.1
430,464 + -0.2
430,464 + +0.0
430,464 + +0.3
430,464 + -1.5
430,464 + -0.2
430,465 - -0.1
430,465 - -2.1
430,505 + +0.6
430,505 + -1.2
430,505 + -3.3
430,516 + -0.3
430,632 + AO353_02020 0.13 +0.5
430,632 + AO353_02020 0.13 -2.0
430,702 - AO353_02020 0.20 -1.0
430,748 - AO353_02020 0.25 -0.7
430,786 - AO353_02020 0.29 +1.3
430,862 + AO353_02020 0.37 -0.5
430,862 + AO353_02020 0.37 -1.0
430,863 - AO353_02020 0.37 -1.0
430,951 - AO353_02020 0.46 -1.8
431,064 - AO353_02020 0.58 -1.8
431,064 - AO353_02020 0.58 -1.7
431,133 + AO353_02020 0.65 -1.2
431,159 + AO353_02020 0.68 -2.0
431,159 + AO353_02020 0.68 -1.6
431,189 - AO353_02020 0.71 -0.7
431,189 - AO353_02020 0.71 -1.8
431,189 - AO353_02020 0.71 -2.2
431,231 + AO353_02020 0.75 -1.2
431,231 + AO353_02020 0.75 -0.7
431,232 - AO353_02020 0.75 -0.4
431,232 - AO353_02020 0.75 -1.8

Or see this region's nucleotide sequence