Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01990 and AO353_01995 are separated by 115 nucleotides AO353_01995 and AO353_02000 are separated by 16 nucleotides
AO353_01990: AO353_01990 - UDP-N-acetylglucosamine 2-epimerase, at 421,400 to 422,512
_01990
AO353_01995: AO353_01995 - hypothetical protein, at 422,628 to 426,335
_01995
AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641
_02000
Position (kb)
422
423
424
425
426
427 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 421.664 kb on - strand, within AO353_01990 at 421.664 kb on - strand, within AO353_01990 at 421.674 kb on + strand, within AO353_01990 at 421.674 kb on + strand, within AO353_01990 at 421.708 kb on - strand, within AO353_01990 at 421.713 kb on - strand, within AO353_01990 at 421.756 kb on + strand, within AO353_01990 at 421.757 kb on - strand, within AO353_01990 at 421.758 kb on + strand, within AO353_01990 at 421.820 kb on - strand, within AO353_01990 at 421.895 kb on + strand, within AO353_01990 at 421.941 kb on - strand, within AO353_01990 at 421.982 kb on - strand, within AO353_01990 at 422.002 kb on + strand, within AO353_01990 at 422.002 kb on + strand, within AO353_01990 at 422.002 kb on + strand, within AO353_01990 at 422.003 kb on - strand, within AO353_01990 at 422.003 kb on - strand, within AO353_01990 at 422.027 kb on + strand, within AO353_01990 at 422.134 kb on + strand, within AO353_01990 at 422.258 kb on - strand, within AO353_01990 at 422.315 kb on + strand, within AO353_01990 at 422.315 kb on + strand, within AO353_01990 at 422.315 kb on + strand, within AO353_01990 at 422.315 kb on + strand, within AO353_01990 at 422.316 kb on - strand, within AO353_01990 at 422.316 kb on - strand, within AO353_01990 at 422.316 kb on - strand, within AO353_01990 at 422.316 kb on - strand, within AO353_01990 at 422.316 kb on - strand, within AO353_01990 at 422.372 kb on - strand, within AO353_01990 at 422.372 kb on - strand, within AO353_01990 at 422.372 kb on - strand, within AO353_01990 at 422.470 kb on + strand at 422.471 kb on - strand at 422.471 kb on - strand at 422.512 kb on + strand at 422.513 kb on - strand at 422.594 kb on + strand at 422.631 kb on + strand at 422.683 kb on + strand at 422.713 kb on + strand at 422.713 kb on + strand at 422.713 kb on + strand at 422.717 kb on + strand at 422.717 kb on + strand at 422.718 kb on - strand at 422.829 kb on - strand at 422.854 kb on + strand at 422.854 kb on + strand at 422.854 kb on + strand at 422.855 kb on - strand at 422.884 kb on - strand at 422.910 kb on - strand at 422.910 kb on - strand at 423.081 kb on + strand, within AO353_01995 at 423.081 kb on + strand, within AO353_01995 at 423.142 kb on + strand, within AO353_01995 at 423.142 kb on + strand, within AO353_01995 at 423.142 kb on + strand, within AO353_01995 at 423.142 kb on + strand, within AO353_01995 at 423.142 kb on + strand, within AO353_01995 at 423.142 kb on + strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.143 kb on - strand, within AO353_01995 at 423.281 kb on + strand, within AO353_01995 at 423.282 kb on - strand, within AO353_01995 at 423.282 kb on - strand, within AO353_01995 at 423.282 kb on - strand, within AO353_01995 at 423.295 kb on + strand, within AO353_01995 at 423.295 kb on + strand, within AO353_01995 at 423.295 kb on + strand, within AO353_01995 at 423.309 kb on + strand, within AO353_01995 at 423.309 kb on + strand, within AO353_01995 at 423.310 kb on - strand, within AO353_01995 at 423.359 kb on + strand, within AO353_01995 at 423.525 kb on + strand, within AO353_01995 at 423.586 kb on + strand, within AO353_01995 at 423.586 kb on + strand, within AO353_01995 at 423.587 kb on - strand, within AO353_01995 at 423.587 kb on - strand, within AO353_01995 at 423.588 kb on + strand, within AO353_01995 at 423.589 kb on - strand, within AO353_01995 at 423.589 kb on - strand, within AO353_01995 at 423.589 kb on - strand, within AO353_01995 at 423.600 kb on + strand, within AO353_01995 at 423.601 kb on - strand, within AO353_01995 at 423.601 kb on - strand, within AO353_01995 at 423.602 kb on + strand, within AO353_01995 at 423.677 kb on + strand, within AO353_01995 at 423.682 kb on - strand, within AO353_01995 at 423.682 kb on - strand, within AO353_01995 at 423.682 kb on - strand, within AO353_01995 at 423.682 kb on - strand, within AO353_01995 at 423.705 kb on + strand, within AO353_01995 at 423.705 kb on + strand, within AO353_01995 at 423.706 kb on - strand, within AO353_01995 at 423.748 kb on - strand, within AO353_01995 at 423.748 kb on - strand, within AO353_01995 at 423.748 kb on - strand, within AO353_01995 at 423.751 kb on + strand, within AO353_01995 at 423.751 kb on + strand, within AO353_01995 at 423.752 kb on - strand, within AO353_01995 at 423.752 kb on - strand, within AO353_01995 at 423.793 kb on + strand, within AO353_01995 at 423.794 kb on - strand, within AO353_01995 at 423.794 kb on - strand, within AO353_01995 at 423.862 kb on + strand, within AO353_01995 at 423.862 kb on + strand, within AO353_01995 at 423.863 kb on - strand, within AO353_01995 at 423.881 kb on - strand, within AO353_01995 at 423.889 kb on + strand, within AO353_01995 at 423.893 kb on + strand, within AO353_01995 at 423.894 kb on - strand, within AO353_01995 at 423.901 kb on + strand, within AO353_01995 at 423.902 kb on - strand, within AO353_01995 at 423.906 kb on - strand, within AO353_01995 at 423.906 kb on - strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.939 kb on + strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 423.940 kb on - strand, within AO353_01995 at 424.068 kb on - strand, within AO353_01995 at 424.075 kb on + strand, within AO353_01995 at 424.075 kb on + strand, within AO353_01995 at 424.076 kb on - strand, within AO353_01995 at 424.076 kb on - strand, within AO353_01995 at 424.102 kb on + strand, within AO353_01995 at 424.102 kb on + strand, within AO353_01995 at 424.103 kb on - strand, within AO353_01995 at 424.112 kb on - strand, within AO353_01995 at 424.181 kb on + strand, within AO353_01995 at 424.181 kb on + strand, within AO353_01995 at 424.181 kb on + strand, within AO353_01995 at 424.181 kb on + strand, within AO353_01995 at 424.181 kb on + strand, within AO353_01995 at 424.181 kb on + strand, within AO353_01995 at 424.182 kb on - strand, within AO353_01995 at 424.182 kb on - strand, within AO353_01995 at 424.182 kb on - strand, within AO353_01995 at 424.184 kb on + strand, within AO353_01995 at 424.185 kb on - strand, within AO353_01995 at 424.185 kb on - strand, within AO353_01995 at 424.185 kb on - strand, within AO353_01995 at 424.185 kb on - strand, within AO353_01995 at 424.185 kb on - strand, within AO353_01995 at 424.185 kb on - strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.276 kb on + strand, within AO353_01995 at 424.277 kb on - strand, within AO353_01995 at 424.277 kb on - strand, within AO353_01995 at 424.277 kb on - strand, within AO353_01995 at 424.277 kb on - strand, within AO353_01995 at 424.277 kb on - strand, within AO353_01995 at 424.299 kb on + strand at 424.299 kb on + strand, within AO353_01995 at 424.638 kb on + strand, within AO353_01995 at 424.741 kb on + strand, within AO353_01995 at 424.741 kb on + strand, within AO353_01995 at 424.741 kb on + strand, within AO353_01995 at 424.791 kb on + strand, within AO353_01995 at 424.971 kb on + strand, within AO353_01995 at 424.971 kb on + strand, within AO353_01995 at 424.977 kb on + strand, within AO353_01995 at 424.977 kb on + strand, within AO353_01995 at 424.977 kb on + strand, within AO353_01995 at 424.992 kb on + strand, within AO353_01995 at 424.992 kb on + strand, within AO353_01995 at 425.117 kb on + strand, within AO353_01995 at 425.117 kb on + strand, within AO353_01995 at 425.117 kb on + strand, within AO353_01995 at 425.117 kb on + strand, within AO353_01995 at 425.117 kb on + strand, within AO353_01995 at 425.117 kb on + strand, within AO353_01995 at 425.214 kb on + strand, within AO353_01995 at 425.219 kb on + strand, within AO353_01995 at 425.219 kb on + strand, within AO353_01995 at 425.219 kb on + strand, within AO353_01995 at 425.259 kb on + strand, within AO353_01995 at 425.259 kb on + strand, within AO353_01995 at 425.259 kb on + strand, within AO353_01995 at 425.273 kb on + strand, within AO353_01995 at 425.273 kb on + strand, within AO353_01995 at 425.310 kb on + strand, within AO353_01995 at 425.320 kb on + strand, within AO353_01995 at 425.404 kb on + strand, within AO353_01995 at 425.404 kb on + strand, within AO353_01995 at 425.426 kb on + strand, within AO353_01995 at 425.521 kb on + strand, within AO353_01995 at 425.789 kb on + strand at 426.354 kb on - strand at 426.354 kb on - strand at 426.598 kb on - strand, within AO353_02000 at 426.749 kb on - strand, within AO353_02000 at 426.749 kb on - strand, within AO353_02000 at 426.751 kb on - strand, within AO353_02000 at 426.868 kb on - strand, within AO353_02000 at 426.911 kb on - strand, within AO353_02000 at 426.957 kb on - strand, within AO353_02000 at 426.961 kb on - strand, within AO353_02000 at 426.988 kb on - strand, within AO353_02000 at 427.159 kb on - strand, within AO353_02000
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 421,664 - AO353_01990 0.24 -1.8 421,664 - AO353_01990 0.24 -2.4 421,674 + AO353_01990 0.25 +0.0 421,674 + AO353_01990 0.25 -2.0 421,708 - AO353_01990 0.28 -1.0 421,713 - AO353_01990 0.28 -1.5 421,756 + AO353_01990 0.32 -2.1 421,757 - AO353_01990 0.32 -2.4 421,758 + AO353_01990 0.32 +0.6 421,820 - AO353_01990 0.38 -2.3 421,895 + AO353_01990 0.44 -0.3 421,941 - AO353_01990 0.49 -1.7 421,982 - AO353_01990 0.52 -1.5 422,002 + AO353_01990 0.54 -2.1 422,002 + AO353_01990 0.54 -2.1 422,002 + AO353_01990 0.54 -2.1 422,003 - AO353_01990 0.54 +0.6 422,003 - AO353_01990 0.54 -1.7 422,027 + AO353_01990 0.56 -1.0 422,134 + AO353_01990 0.66 -3.0 422,258 - AO353_01990 0.77 -0.6 422,315 + AO353_01990 0.82 -2.0 422,315 + AO353_01990 0.82 -1.8 422,315 + AO353_01990 0.82 -2.3 422,315 + AO353_01990 0.82 -1.7 422,316 - AO353_01990 0.82 -1.0 422,316 - AO353_01990 0.82 -1.6 422,316 - AO353_01990 0.82 -1.5 422,316 - AO353_01990 0.82 -2.5 422,316 - AO353_01990 0.82 -2.0 422,372 - AO353_01990 0.87 -2.1 422,372 - AO353_01990 0.87 -2.9 422,372 - AO353_01990 0.87 -2.9 422,470 + -1.0 422,471 - -0.3 422,471 - +0.2 422,512 + -0.3 422,513 - -1.1 422,594 + -2.5 422,631 + -0.7 422,683 + -1.1 422,713 + -1.3 422,713 + -1.5 422,713 + -1.8 422,717 + -1.7 422,717 + -1.3 422,718 - -1.0 422,829 - -1.5 422,854 + -1.7 422,854 + -1.0 422,854 + -1.1 422,855 - -0.3 422,884 - -2.1 422,910 - -2.5 422,910 - -1.5 423,081 + AO353_01995 0.12 -2.4 423,081 + AO353_01995 0.12 -1.3 423,142 + AO353_01995 0.14 -0.3 423,142 + AO353_01995 0.14 -1.3 423,142 + AO353_01995 0.14 -0.3 423,142 + AO353_01995 0.14 -0.3 423,142 + AO353_01995 0.14 -0.1 423,142 + AO353_01995 0.14 -0.8 423,143 - AO353_01995 0.14 +0.6 423,143 - AO353_01995 0.14 +1.5 423,143 - AO353_01995 0.14 -2.9 423,143 - AO353_01995 0.14 -1.6 423,143 - AO353_01995 0.14 -2.4 423,143 - AO353_01995 0.14 -2.9 423,143 - AO353_01995 0.14 +1.3 423,143 - AO353_01995 0.14 +0.6 423,281 + AO353_01995 0.18 -1.6 423,282 - AO353_01995 0.18 +0.5 423,282 - AO353_01995 0.18 -1.7 423,282 - AO353_01995 0.18 -2.4 423,295 + AO353_01995 0.18 -2.5 423,295 + AO353_01995 0.18 -1.4 423,295 + AO353_01995 0.18 -0.1 423,309 + AO353_01995 0.18 +0.5 423,309 + AO353_01995 0.18 -1.7 423,310 - AO353_01995 0.18 -1.0 423,359 + AO353_01995 0.20 -0.7 423,525 + AO353_01995 0.24 -1.8 423,586 + AO353_01995 0.26 +0.4 423,586 + AO353_01995 0.26 -1.7 423,587 - AO353_01995 0.26 -1.7 423,587 - AO353_01995 0.26 +1.3 423,588 + AO353_01995 0.26 -1.5 423,589 - AO353_01995 0.26 -1.1 423,589 - AO353_01995 0.26 -0.7 423,589 - AO353_01995 0.26 -2.1 423,600 + AO353_01995 0.26 -2.0 423,601 - AO353_01995 0.26 -1.5 423,601 - AO353_01995 0.26 +0.6 423,602 + AO353_01995 0.26 -1.0 423,677 + AO353_01995 0.28 -1.8 423,682 - AO353_01995 0.28 -1.7 423,682 - AO353_01995 0.28 +0.7 423,682 - AO353_01995 0.28 -1.3 423,682 - AO353_01995 0.28 -0.7 423,705 + AO353_01995 0.29 -1.7 423,705 + AO353_01995 0.29 -2.3 423,706 - AO353_01995 0.29 -0.5 423,748 - AO353_01995 0.30 -0.8 423,748 - AO353_01995 0.30 -1.3 423,748 - AO353_01995 0.30 -1.7 423,751 + AO353_01995 0.30 -2.3 423,751 + AO353_01995 0.30 -2.0 423,752 - AO353_01995 0.30 -1.7 423,752 - AO353_01995 0.30 -0.7 423,793 + AO353_01995 0.31 -0.3 423,794 - AO353_01995 0.31 -2.5 423,794 - AO353_01995 0.31 -1.3 423,862 + AO353_01995 0.33 -2.1 423,862 + AO353_01995 0.33 -1.0 423,863 - AO353_01995 0.33 -2.1 423,881 - AO353_01995 0.34 -1.7 423,889 + AO353_01995 0.34 +0.3 423,893 + AO353_01995 0.34 -1.5 423,894 - AO353_01995 0.34 +0.0 423,901 + AO353_01995 0.34 -1.8 423,902 - AO353_01995 0.34 -2.0 423,906 - AO353_01995 0.34 -0.7 423,906 - AO353_01995 0.34 -1.5 423,939 + AO353_01995 0.35 -1.9 423,939 + AO353_01995 0.35 -2.0 423,939 + AO353_01995 0.35 -1.5 423,939 + AO353_01995 0.35 -1.5 423,939 + AO353_01995 0.35 +0.2 423,939 + AO353_01995 0.35 -2.3 423,939 + AO353_01995 0.35 -1.3 423,940 - AO353_01995 0.35 -1.1 423,940 - AO353_01995 0.35 +0.5 423,940 - AO353_01995 0.35 -0.1 423,940 - AO353_01995 0.35 -0.6 423,940 - AO353_01995 0.35 -3.2 423,940 - AO353_01995 0.35 -1.1 423,940 - AO353_01995 0.35 -1.0 424,068 - AO353_01995 0.39 -2.1 424,075 + AO353_01995 0.39 -0.1 424,075 + AO353_01995 0.39 -1.3 424,076 - AO353_01995 0.39 -0.7 424,076 - AO353_01995 0.39 -1.3 424,102 + AO353_01995 0.40 -1.3 424,102 + AO353_01995 0.40 -2.5 424,103 - AO353_01995 0.40 -1.0 424,112 - AO353_01995 0.40 -1.3 424,181 + AO353_01995 0.42 -2.8 424,181 + AO353_01995 0.42 -2.3 424,181 + AO353_01995 0.42 -1.5 424,181 + AO353_01995 0.42 -1.4 424,181 + AO353_01995 0.42 -0.7 424,181 + AO353_01995 0.42 -2.8 424,182 - AO353_01995 0.42 -1.5 424,182 - AO353_01995 0.42 -2.3 424,182 - AO353_01995 0.42 -1.7 424,184 + AO353_01995 0.42 -2.4 424,185 - AO353_01995 0.42 -1.5 424,185 - AO353_01995 0.42 -1.7 424,185 - AO353_01995 0.42 -2.8 424,185 - AO353_01995 0.42 -0.8 424,185 - AO353_01995 0.42 -1.8 424,185 - AO353_01995 0.42 -1.5 424,276 + AO353_01995 0.44 -0.3 424,276 + AO353_01995 0.44 -0.8 424,276 + AO353_01995 0.44 -2.3 424,276 + AO353_01995 0.44 -1.7 424,276 + AO353_01995 0.44 -1.3 424,276 + AO353_01995 0.44 -2.3 424,276 + AO353_01995 0.44 -2.3 424,277 - AO353_01995 0.44 -1.6 424,277 - AO353_01995 0.44 -2.0 424,277 - AO353_01995 0.44 -1.8 424,277 - AO353_01995 0.44 -1.0 424,277 - AO353_01995 0.44 -0.5 424,299 + +0.1 424,299 + AO353_01995 0.45 -0.7 424,638 + AO353_01995 0.54 -0.5 424,741 + AO353_01995 0.57 -3.1 424,741 + AO353_01995 0.57 -1.7 424,741 + AO353_01995 0.57 -2.0 424,791 + AO353_01995 0.58 -2.3 424,971 + AO353_01995 0.63 -2.1 424,971 + AO353_01995 0.63 -0.3 424,977 + AO353_01995 0.63 -1.1 424,977 + AO353_01995 0.63 -1.7 424,977 + AO353_01995 0.63 -0.5 424,992 + AO353_01995 0.64 +1.3 424,992 + AO353_01995 0.64 -0.7 425,117 + AO353_01995 0.67 +0.3 425,117 + AO353_01995 0.67 +1.5 425,117 + AO353_01995 0.67 +0.2 425,117 + AO353_01995 0.67 -0.9 425,117 + AO353_01995 0.67 +0.1 425,117 + AO353_01995 0.67 -0.5 425,214 + AO353_01995 0.70 -1.5 425,219 + AO353_01995 0.70 -0.3 425,219 + AO353_01995 0.70 -1.7 425,219 + AO353_01995 0.70 -2.4 425,259 + AO353_01995 0.71 -1.7 425,259 + AO353_01995 0.71 -1.4 425,259 + AO353_01995 0.71 -2.1 425,273 + AO353_01995 0.71 -1.6 425,273 + AO353_01995 0.71 -0.8 425,310 + AO353_01995 0.72 -2.6 425,320 + AO353_01995 0.73 -2.7 425,404 + AO353_01995 0.75 -2.4 425,404 + AO353_01995 0.75 -2.3 425,426 + AO353_01995 0.75 +0.3 425,521 + AO353_01995 0.78 +0.3 425,789 + -0.3 426,354 - +0.3 426,354 - +0.9 426,598 - AO353_02000 0.19 -1.0 426,749 - AO353_02000 0.31 -1.4 426,749 - AO353_02000 0.31 -1.0 426,751 - AO353_02000 0.31 -0.7 426,868 - AO353_02000 0.40 +0.3 426,911 - AO353_02000 0.43 -0.7 426,957 - AO353_02000 0.47 +0.3 426,961 - AO353_02000 0.47 +0.3 426,988 - AO353_02000 0.49 -0.3 427,159 - AO353_02000 0.63 -0.6
Or see this region's nucleotide sequence