Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01990

Experiment: Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01985 and AO353_01990 are separated by 5 nucleotidesAO353_01990 and AO353_01995 are separated by 115 nucleotides AO353_01985: AO353_01985 - hypothetical protein, at 420,285 to 421,394 _01985 AO353_01990: AO353_01990 - UDP-N-acetylglucosamine 2-epimerase, at 421,400 to 422,512 _01990 AO353_01995: AO353_01995 - hypothetical protein, at 422,628 to 426,335 _01995 Position (kb) 421 422 423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 420.410 kb on + strand, within AO353_01985at 420.410 kb on + strand, within AO353_01985at 420.411 kb on - strand, within AO353_01985at 420.411 kb on - strand, within AO353_01985at 420.437 kb on + strand, within AO353_01985at 420.437 kb on + strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.438 kb on - strand, within AO353_01985at 420.442 kb on - strand, within AO353_01985at 420.442 kb on - strand, within AO353_01985at 420.488 kb on + strand, within AO353_01985at 420.488 kb on + strand, within AO353_01985at 420.489 kb on - strand, within AO353_01985at 420.514 kb on + strand, within AO353_01985at 420.520 kb on + strand, within AO353_01985at 420.523 kb on + strand, within AO353_01985at 420.523 kb on + strand, within AO353_01985at 420.523 kb on + strand, within AO353_01985at 420.524 kb on - strand, within AO353_01985at 420.524 kb on - strand, within AO353_01985at 420.590 kb on + strand, within AO353_01985at 420.590 kb on + strand, within AO353_01985at 420.590 kb on + strand, within AO353_01985at 420.590 kb on + strand, within AO353_01985at 420.590 kb on + strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.591 kb on - strand, within AO353_01985at 420.671 kb on + strand, within AO353_01985at 420.671 kb on + strand, within AO353_01985at 420.672 kb on - strand, within AO353_01985at 420.672 kb on - strand, within AO353_01985at 420.673 kb on + strand, within AO353_01985at 420.673 kb on + strand, within AO353_01985at 420.674 kb on - strand, within AO353_01985at 420.674 kb on - strand, within AO353_01985at 420.674 kb on - strand, within AO353_01985at 420.674 kb on - strand, within AO353_01985at 420.674 kb on - strand, within AO353_01985at 420.674 kb on - strand, within AO353_01985at 420.756 kb on - strand, within AO353_01985at 420.758 kb on + strand, within AO353_01985at 420.758 kb on + strand, within AO353_01985at 420.759 kb on - strand, within AO353_01985at 420.759 kb on - strand, within AO353_01985at 420.766 kb on + strand, within AO353_01985at 420.767 kb on - strand, within AO353_01985at 420.933 kb on + strand, within AO353_01985at 420.933 kb on + strand, within AO353_01985at 420.979 kb on + strand, within AO353_01985at 420.979 kb on + strand, within AO353_01985at 420.979 kb on + strand, within AO353_01985at 420.979 kb on + strand, within AO353_01985at 420.979 kb on + strand, within AO353_01985at 420.980 kb on - strand, within AO353_01985at 420.980 kb on - strand, within AO353_01985at 421.009 kb on + strand, within AO353_01985at 421.010 kb on - strand, within AO353_01985at 421.085 kb on + strand, within AO353_01985at 421.119 kb on + strand, within AO353_01985at 421.138 kb on + strand, within AO353_01985at 421.146 kb on + strand, within AO353_01985at 421.147 kb on - strand, within AO353_01985at 421.235 kb on + strand, within AO353_01985at 421.235 kb on + strand, within AO353_01985at 421.236 kb on - strand, within AO353_01985at 421.236 kb on - strandat 421.344 kb on - strandat 421.384 kb on - strandat 421.387 kb on + strandat 421.387 kb on + strandat 421.387 kb on + strandat 421.388 kb on - strandat 421.388 kb on - strandat 421.388 kb on - strandat 421.489 kb on - strandat 421.532 kb on + strand, within AO353_01990at 421.533 kb on - strand, within AO353_01990at 421.533 kb on - strand, within AO353_01990at 421.533 kb on - strand, within AO353_01990at 421.664 kb on - strand, within AO353_01990at 421.664 kb on - strand, within AO353_01990at 421.674 kb on + strand, within AO353_01990at 421.674 kb on + strand, within AO353_01990at 421.708 kb on - strand, within AO353_01990at 421.713 kb on - strand, within AO353_01990at 421.756 kb on + strand, within AO353_01990at 421.757 kb on - strand, within AO353_01990at 421.758 kb on + strand, within AO353_01990at 421.820 kb on - strand, within AO353_01990at 421.895 kb on + strand, within AO353_01990at 421.941 kb on - strand, within AO353_01990at 421.982 kb on - strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.003 kb on - strand, within AO353_01990at 422.003 kb on - strand, within AO353_01990at 422.027 kb on + strand, within AO353_01990at 422.134 kb on + strand, within AO353_01990at 422.258 kb on - strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.470 kb on + strandat 422.471 kb on - strandat 422.471 kb on - strandat 422.512 kb on + strandat 422.513 kb on - strandat 422.594 kb on + strandat 422.631 kb on + strandat 422.683 kb on + strandat 422.713 kb on + strandat 422.713 kb on + strandat 422.713 kb on + strandat 422.717 kb on + strandat 422.717 kb on + strandat 422.718 kb on - strandat 422.829 kb on - strandat 422.854 kb on + strandat 422.854 kb on + strandat 422.854 kb on + strandat 422.855 kb on - strandat 422.884 kb on - strandat 422.910 kb on - strandat 422.910 kb on - strandat 423.081 kb on + strand, within AO353_01995at 423.081 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.281 kb on + strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.309 kb on + strand, within AO353_01995at 423.309 kb on + strand, within AO353_01995at 423.310 kb on - strand, within AO353_01995at 423.359 kb on + strand, within AO353_01995

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
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420,410 + AO353_01985 0.11 -0.8
420,410 + AO353_01985 0.11 -0.3
420,411 - AO353_01985 0.11 -1.0
420,411 - AO353_01985 0.11 -2.0
420,437 + AO353_01985 0.14 -1.7
420,437 + AO353_01985 0.14 -3.0
420,438 - AO353_01985 0.14 -1.1
420,438 - AO353_01985 0.14 -0.8
420,438 - AO353_01985 0.14 -2.5
420,438 - AO353_01985 0.14 -0.6
420,438 - AO353_01985 0.14 -1.8
420,438 - AO353_01985 0.14 -1.3
420,438 - AO353_01985 0.14 -1.3
420,438 - AO353_01985 0.14 -2.1
420,442 - AO353_01985 0.14 -2.4
420,442 - AO353_01985 0.14 -2.8
420,488 + AO353_01985 0.18 -0.1
420,488 + AO353_01985 0.18 -1.9
420,489 - AO353_01985 0.18 -1.0
420,514 + AO353_01985 0.21 -2.8
420,520 + AO353_01985 0.21 -2.1
420,523 + AO353_01985 0.21 -3.2
420,523 + AO353_01985 0.21 -1.5
420,523 + AO353_01985 0.21 -2.0
420,524 - AO353_01985 0.22 +0.3
420,524 - AO353_01985 0.22 -2.3
420,590 + AO353_01985 0.27 -3.5
420,590 + AO353_01985 0.27 -1.1
420,590 + AO353_01985 0.27 -0.1
420,590 + AO353_01985 0.27 -1.8
420,590 + AO353_01985 0.27 -0.7
420,591 - AO353_01985 0.28 -1.0
420,591 - AO353_01985 0.28 -1.7
420,591 - AO353_01985 0.28 -1.5
420,591 - AO353_01985 0.28 -1.0
420,591 - AO353_01985 0.28 -1.8
420,591 - AO353_01985 0.28 -1.2
420,591 - AO353_01985 0.28 -1.0
420,591 - AO353_01985 0.28 -1.8
420,671 + AO353_01985 0.35 -2.4
420,671 + AO353_01985 0.35 -3.8
420,672 - AO353_01985 0.35 -0.7
420,672 - AO353_01985 0.35 +1.8
420,673 + AO353_01985 0.35 -1.3
420,673 + AO353_01985 0.35 -1.5
420,674 - AO353_01985 0.35 +0.5
420,674 - AO353_01985 0.35 -2.7
420,674 - AO353_01985 0.35 -1.8
420,674 - AO353_01985 0.35 -1.3
420,674 - AO353_01985 0.35 -3.1
420,674 - AO353_01985 0.35 -0.3
420,756 - AO353_01985 0.42 +0.0
420,758 + AO353_01985 0.43 -1.8
420,758 + AO353_01985 0.43 -2.1
420,759 - AO353_01985 0.43 -0.5
420,759 - AO353_01985 0.43 -1.3
420,766 + AO353_01985 0.43 -1.8
420,767 - AO353_01985 0.43 -2.0
420,933 + AO353_01985 0.58 -2.6
420,933 + AO353_01985 0.58 -2.0
420,979 + AO353_01985 0.63 -0.1
420,979 + AO353_01985 0.63 -2.5
420,979 + AO353_01985 0.63 -1.9
420,979 + AO353_01985 0.63 -1.8
420,979 + AO353_01985 0.63 -1.0
420,980 - AO353_01985 0.63 -1.5
420,980 - AO353_01985 0.63 -0.1
421,009 + AO353_01985 0.65 +0.3
421,010 - AO353_01985 0.65 -1.3
421,085 + AO353_01985 0.72 -1.0
421,119 + AO353_01985 0.75 -1.5
421,138 + AO353_01985 0.77 -1.0
421,146 + AO353_01985 0.78 -1.0
421,147 - AO353_01985 0.78 -0.8
421,235 + AO353_01985 0.86 -1.7
421,235 + AO353_01985 0.86 -1.0
421,236 - AO353_01985 0.86 -1.5
421,236 - -1.3
421,344 - +1.1
421,384 - -1.7
421,387 + -0.6
421,387 + +0.1
421,387 + -1.3
421,388 - -2.4
421,388 - -0.4
421,388 - -1.5
421,489 - -1.7
421,532 + AO353_01990 0.12 -2.4
421,533 - AO353_01990 0.12 -1.1
421,533 - AO353_01990 0.12 -2.3
421,533 - AO353_01990 0.12 -1.7
421,664 - AO353_01990 0.24 -1.8
421,664 - AO353_01990 0.24 -2.4
421,674 + AO353_01990 0.25 +0.0
421,674 + AO353_01990 0.25 -2.0
421,708 - AO353_01990 0.28 -1.0
421,713 - AO353_01990 0.28 -1.5
421,756 + AO353_01990 0.32 -2.1
421,757 - AO353_01990 0.32 -2.4
421,758 + AO353_01990 0.32 +0.6
421,820 - AO353_01990 0.38 -2.3
421,895 + AO353_01990 0.44 -0.3
421,941 - AO353_01990 0.49 -1.7
421,982 - AO353_01990 0.52 -1.5
422,002 + AO353_01990 0.54 -2.1
422,002 + AO353_01990 0.54 -2.1
422,002 + AO353_01990 0.54 -2.1
422,003 - AO353_01990 0.54 +0.6
422,003 - AO353_01990 0.54 -1.7
422,027 + AO353_01990 0.56 -1.0
422,134 + AO353_01990 0.66 -3.0
422,258 - AO353_01990 0.77 -0.6
422,315 + AO353_01990 0.82 -2.0
422,315 + AO353_01990 0.82 -1.8
422,315 + AO353_01990 0.82 -2.3
422,315 + AO353_01990 0.82 -1.7
422,316 - AO353_01990 0.82 -1.0
422,316 - AO353_01990 0.82 -1.6
422,316 - AO353_01990 0.82 -1.5
422,316 - AO353_01990 0.82 -2.5
422,316 - AO353_01990 0.82 -2.0
422,372 - AO353_01990 0.87 -2.1
422,372 - AO353_01990 0.87 -2.9
422,372 - AO353_01990 0.87 -2.9
422,470 + -1.0
422,471 - -0.3
422,471 - +0.2
422,512 + -0.3
422,513 - -1.1
422,594 + -2.5
422,631 + -0.7
422,683 + -1.1
422,713 + -1.3
422,713 + -1.5
422,713 + -1.8
422,717 + -1.7
422,717 + -1.3
422,718 - -1.0
422,829 - -1.5
422,854 + -1.7
422,854 + -1.0
422,854 + -1.1
422,855 - -0.3
422,884 - -2.1
422,910 - -2.5
422,910 - -1.5
423,081 + AO353_01995 0.12 -2.4
423,081 + AO353_01995 0.12 -1.3
423,142 + AO353_01995 0.14 -0.3
423,142 + AO353_01995 0.14 -1.3
423,142 + AO353_01995 0.14 -0.3
423,142 + AO353_01995 0.14 -0.3
423,142 + AO353_01995 0.14 -0.1
423,142 + AO353_01995 0.14 -0.8
423,143 - AO353_01995 0.14 +0.6
423,143 - AO353_01995 0.14 +1.5
423,143 - AO353_01995 0.14 -2.9
423,143 - AO353_01995 0.14 -1.6
423,143 - AO353_01995 0.14 -2.4
423,143 - AO353_01995 0.14 -2.9
423,143 - AO353_01995 0.14 +1.3
423,143 - AO353_01995 0.14 +0.6
423,281 + AO353_01995 0.18 -1.6
423,282 - AO353_01995 0.18 +0.5
423,282 - AO353_01995 0.18 -1.7
423,282 - AO353_01995 0.18 -2.4
423,295 + AO353_01995 0.18 -2.5
423,295 + AO353_01995 0.18 -1.4
423,295 + AO353_01995 0.18 -0.1
423,309 + AO353_01995 0.18 +0.5
423,309 + AO353_01995 0.18 -1.7
423,310 - AO353_01995 0.18 -1.0
423,359 + AO353_01995 0.20 -0.7

Or see this region's nucleotide sequence