Experiment: Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00630 and AO353_00635 are separated by 11 nucleotides AO353_00635 and AO353_00640 are separated by 176 nucleotides
AO353_00630: AO353_00630 - (Fe-S)-binding protein, at 132,916 to 134,331
_00630
AO353_00635: AO353_00635 - hypothetical protein, at 134,343 to 134,882
_00635
AO353_00640: AO353_00640 - carbonate dehydratase, at 135,059 to 137,509
_00640
Position (kb) 134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.514 kb on - strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.585 kb on + strand, within AO353_00630 at 133.586 kb on - strand, within AO353_00630 at 133.648 kb on + strand, within AO353_00630 at 133.699 kb on + strand, within AO353_00630 at 133.873 kb on + strand, within AO353_00630 at 133.874 kb on - strand, within AO353_00630 at 134.032 kb on + strand, within AO353_00630 at 134.068 kb on + strand, within AO353_00630 at 134.068 kb on + strand, within AO353_00630 at 134.110 kb on + strand, within AO353_00630 at 134.110 kb on + strand, within AO353_00630 at 134.110 kb on + strand, within AO353_00630 at 134.110 kb on + strand, within AO353_00630 at 134.110 kb on + strand, within AO353_00630 at 134.110 kb on + strand, within AO353_00630 at 134.111 kb on - strand, within AO353_00630 at 134.373 kb on + strand at 134.373 kb on + strand at 134.374 kb on - strand at 134.487 kb on + strand, within AO353_00635 at 134.487 kb on + strand, within AO353_00635 at 134.487 kb on + strand, within AO353_00635 at 134.490 kb on + strand, within AO353_00635 at 134.599 kb on + strand, within AO353_00635 at 134.715 kb on + strand, within AO353_00635 at 134.715 kb on + strand, within AO353_00635 at 134.715 kb on + strand, within AO353_00635 at 134.715 kb on + strand, within AO353_00635 at 134.716 kb on - strand, within AO353_00635 at 134.718 kb on - strand, within AO353_00635 at 134.880 kb on + strand at 134.965 kb on + strand at 135.039 kb on + strand at 135.039 kb on + strand at 135.039 kb on + strand at 135.039 kb on + strand at 135.039 kb on + strand at 135.039 kb on + strand at 135.039 kb on + strand at 135.080 kb on + strand at 135.209 kb on + strand at 135.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml remove 133,514 - AO353_00630 0.42 -0.1 133,585 + AO353_00630 0.47 -0.5 133,585 + AO353_00630 0.47 -1.3 133,585 + AO353_00630 0.47 -0.9 133,585 + AO353_00630 0.47 +0.6 133,585 + AO353_00630 0.47 -1.0 133,585 + AO353_00630 0.47 -0.7 133,585 + AO353_00630 0.47 -1.6 133,585 + AO353_00630 0.47 -1.9 133,586 - AO353_00630 0.47 -1.3 133,648 + AO353_00630 0.52 -0.4 133,699 + AO353_00630 0.55 +1.3 133,873 + AO353_00630 0.68 +1.3 133,874 - AO353_00630 0.68 +0.7 134,032 + AO353_00630 0.79 +1.3 134,068 + AO353_00630 0.81 +2.0 134,068 + AO353_00630 0.81 -0.7 134,110 + AO353_00630 0.84 -0.3 134,110 + AO353_00630 0.84 +0.3 134,110 + AO353_00630 0.84 +0.4 134,110 + AO353_00630 0.84 +0.1 134,110 + AO353_00630 0.84 -2.2 134,110 + AO353_00630 0.84 -0.2 134,111 - AO353_00630 0.84 -0.9 134,373 + -0.5 134,373 + +0.5 134,374 - +0.5 134,487 + AO353_00635 0.27 -1.6 134,487 + AO353_00635 0.27 -0.3 134,487 + AO353_00635 0.27 -0.7 134,490 + AO353_00635 0.27 -0.3 134,599 + AO353_00635 0.47 +0.3 134,715 + AO353_00635 0.69 -1.0 134,715 + AO353_00635 0.69 -0.3 134,715 + AO353_00635 0.69 -0.7 134,715 + AO353_00635 0.69 +0.8 134,716 - AO353_00635 0.69 -1.7 134,718 - AO353_00635 0.69 -0.7 134,880 + +0.0 134,965 + +0.5 135,039 + -0.0 135,039 + -0.3 135,039 + +0.4 135,039 + -0.3 135,039 + +0.7 135,039 + -0.0 135,039 + -1.3 135,080 + +1.3 135,209 + -2.2 135,213 - -1.3
Or see this region's nucleotide sequence