Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3361 and Shew_3362 are separated by 112 nucleotides Shew_3362 and Shew_3363 are separated by 116 nucleotides Shew_3363 and Shew_3364 are separated by 6 nucleotides Shew_3364 and Shew_3365 are separated by 40 nucleotides
Shew_3361: Shew_3361 - hypothetical protein (RefSeq), at 4,009,952 to 4,010,335
_3361
Shew_3362: Shew_3362 - hypothetical protein (RefSeq), at 4,010,448 to 4,010,858
_3362
Shew_3363: Shew_3363 - 3-dehydroquinate dehydratase, type II (RefSeq), at 4,010,975 to 4,011,427
_3363
Shew_3364: Shew_3364 - acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq), at 4,011,434 to 4,011,865
_3364
Shew_3365: Shew_3365 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 4,011,906 to 4,013,258
_3365
Position (kb)
4010
4011
4012 Strain fitness (log2 ratio)
-1
0
1 at 4009.984 kb on - strand at 4010.012 kb on - strand, within Shew_3361 at 4010.055 kb on - strand, within Shew_3361 at 4010.403 kb on + strand at 4011.162 kb on + strand, within Shew_3363 at 4011.252 kb on - strand, within Shew_3363 at 4011.380 kb on + strand, within Shew_3363 at 4011.393 kb on - strand at 4011.403 kb on + strand at 4011.708 kb on - strand, within Shew_3364 at 4011.745 kb on - strand, within Shew_3364
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,009,984 - +0.2 4,010,012 - Shew_3361 0.16 +0.0 4,010,055 - Shew_3361 0.27 +0.2 4,010,403 + +0.2 4,011,162 + Shew_3363 0.41 -1.2 4,011,252 - Shew_3363 0.61 +0.1 4,011,380 + Shew_3363 0.89 +0.1 4,011,393 - -0.7 4,011,403 + -0.1 4,011,708 - Shew_3364 0.63 +0.0 4,011,745 - Shew_3364 0.72 +0.1
Or see this region's nucleotide sequence