Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2792 and Shew_2793 are separated by 241 nucleotides Shew_2793 and Shew_2794 are separated by 355 nucleotides Shew_2794 and Shew_2795 are separated by 145 nucleotides
Shew_2792: Shew_2792 - phospholipid/glycerol acyltransferase (RefSeq), at 3,305,141 to 3,306,958
_2792
Shew_2793: Shew_2793 - succinyl-diaminopimelate desuccinylase (RefSeq), at 3,307,200 to 3,308,333
_2793
Shew_2794: Shew_2794 - CBS domain-containing protein (RefSeq), at 3,308,689 to 3,309,117
_2794
Shew_2795: Shew_2795 - xanthine/uracil/vitamin C permease (RefSeq), at 3,309,263 to 3,310,621
_2795
Position (kb)
3307
3308
3309 Strain fitness (log2 ratio)
-1
0
1 at 3306.426 kb on + strand, within Shew_2792 at 3306.434 kb on - strand, within Shew_2792 at 3306.541 kb on - strand, within Shew_2792 at 3306.562 kb on + strand, within Shew_2792 at 3306.570 kb on - strand, within Shew_2792 at 3306.570 kb on - strand, within Shew_2792 at 3307.610 kb on - strand, within Shew_2793 at 3307.726 kb on + strand, within Shew_2793 at 3307.787 kb on + strand, within Shew_2793 at 3307.820 kb on - strand, within Shew_2793 at 3307.870 kb on + strand, within Shew_2793 at 3307.924 kb on - strand, within Shew_2793 at 3308.015 kb on - strand, within Shew_2793 at 3308.335 kb on + strand at 3308.669 kb on - strand at 3309.094 kb on - strand at 3309.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,306,426 + Shew_2792 0.71 +0.4 3,306,434 - Shew_2792 0.71 +0.1 3,306,541 - Shew_2792 0.77 +0.1 3,306,562 + Shew_2792 0.78 +0.2 3,306,570 - Shew_2792 0.79 +0.4 3,306,570 - Shew_2792 0.79 +0.4 3,307,610 - Shew_2793 0.36 -0.0 3,307,726 + Shew_2793 0.46 -0.2 3,307,787 + Shew_2793 0.52 -0.0 3,307,820 - Shew_2793 0.55 +0.0 3,307,870 + Shew_2793 0.59 +0.1 3,307,924 - Shew_2793 0.64 -0.7 3,308,015 - Shew_2793 0.72 -0.9 3,308,335 + +0.1 3,308,669 - -0.2 3,309,094 - -0.3 3,309,186 - -0.3
Or see this region's nucleotide sequence