Strain Fitness in Shewanella loihica PV-4 around Shew_2363

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2362 and Shew_2363 are separated by 20 nucleotidesShew_2363 and Shew_2364 are separated by 26 nucleotides Shew_2362: Shew_2362 - dihydrodipicolinate synthase (RefSeq), at 2,762,994 to 2,763,908 _2362 Shew_2363: Shew_2363 - proline racemase (RefSeq), at 2,763,929 to 2,764,930 _2363 Shew_2364: Shew_2364 - aldehyde dehydrogenase (RefSeq), at 2,764,957 to 2,766,522 _2364 Position (kb) 2763 2764 2765Strain fitness (log2 ratio) -1 0 1at 2762.975 kb on + strandat 2763.012 kb on + strandat 2763.198 kb on - strand, within Shew_2362at 2763.643 kb on + strand, within Shew_2362at 2763.643 kb on + strand, within Shew_2362at 2763.723 kb on + strand, within Shew_2362at 2764.270 kb on + strand, within Shew_2363at 2764.409 kb on - strand, within Shew_2363at 2764.473 kb on + strand, within Shew_2363at 2764.547 kb on + strand, within Shew_2363at 2764.555 kb on - strand, within Shew_2363at 2764.894 kb on - strandat 2765.047 kb on - strandat 2765.199 kb on + strand, within Shew_2364at 2765.630 kb on - strand, within Shew_2364at 2765.868 kb on + strand, within Shew_2364at 2765.871 kb on - strand, within Shew_2364

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,762,975 + +0.1
2,763,012 + -0.0
2,763,198 - Shew_2362 0.22 +0.2
2,763,643 + Shew_2362 0.71 -0.1
2,763,643 + Shew_2362 0.71 -0.3
2,763,723 + Shew_2362 0.80 -0.2
2,764,270 + Shew_2363 0.34 -0.3
2,764,409 - Shew_2363 0.48 -0.8
2,764,473 + Shew_2363 0.54 -0.9
2,764,547 + Shew_2363 0.62 -1.0
2,764,555 - Shew_2363 0.62 -0.1
2,764,894 - -0.2
2,765,047 - -0.2
2,765,199 + Shew_2364 0.15 +0.3
2,765,630 - Shew_2364 0.43 -0.1
2,765,868 + Shew_2364 0.58 -0.1
2,765,871 - Shew_2364 0.58 -0.2

Or see this region's nucleotide sequence