Strain Fitness in Shewanella loihica PV-4 around Shew_1739

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1738 and Shew_1739 are separated by 270 nucleotidesShew_1739 and Shew_1740 are separated by 95 nucleotidesShew_1740 and Shew_1741 are separated by 257 nucleotides Shew_1738: Shew_1738 - aminoglycoside phosphotransferase (RefSeq), at 1,988,567 to 1,989,706 _1738 Shew_1739: Shew_1739 - DoxX family protein (RefSeq), at 1,989,977 to 1,990,567 _1739 Shew_1740: Shew_1740 - nitroreductase (RefSeq), at 1,990,663 to 1,991,211 _1740 Shew_1741: Shew_1741 - beta-lactamase domain-containing protein (RefSeq), at 1,991,469 to 1,992,200 _1741 Position (kb) 1989 1990 1991Strain fitness (log2 ratio) -1 0 1 2at 1989.226 kb on + strand, within Shew_1738at 1989.569 kb on - strand, within Shew_1738at 1989.587 kb on + strand, within Shew_1738at 1989.643 kb on - strandat 1989.810 kb on + strandat 1989.842 kb on + strandat 1990.158 kb on - strand, within Shew_1739at 1990.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,989,226 + Shew_1738 0.58 -0.6
1,989,569 - Shew_1738 0.88 -0.1
1,989,587 + Shew_1738 0.89 -0.0
1,989,643 - -0.6
1,989,810 + -0.2
1,989,842 + +1.5
1,990,158 - Shew_1739 0.31 +0.5
1,990,569 - +2.1

Or see this region's nucleotide sequence