Strain Fitness in Shewanella loihica PV-4 around Shew_0426

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0425 and Shew_0426 overlap by 14 nucleotidesShew_0426 and Shew_0427 overlap by 1 nucleotides Shew_0425: Shew_0425 - ABC-2 type transporter (RefSeq), at 478,213 to 479,313 _0425 Shew_0426: Shew_0426 - ABC transporter-related protein (RefSeq), at 479,300 to 480,322 _0426 Shew_0427: Shew_0427 - hypothetical protein (RefSeq), at 480,322 to 481,275 _0427 Position (kb) 479 480 481Strain fitness (log2 ratio) -1 0 1at 478.481 kb on + strand, within Shew_0425at 478.699 kb on - strand, within Shew_0425at 478.725 kb on + strand, within Shew_0425at 478.725 kb on + strand, within Shew_0425at 478.770 kb on + strand, within Shew_0425at 478.805 kb on + strand, within Shew_0425at 478.823 kb on - strand, within Shew_0425at 478.823 kb on - strand, within Shew_0425at 479.205 kb on + strandat 479.469 kb on + strand, within Shew_0426at 479.471 kb on - strand, within Shew_0426at 480.330 kb on + strandat 480.361 kb on + strandat 480.369 kb on - strandat 480.660 kb on - strand, within Shew_0427at 480.798 kb on - strand, within Shew_0427at 480.861 kb on + strand, within Shew_0427at 481.020 kb on - strand, within Shew_0427at 481.176 kb on + strand, within Shew_0427

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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478,481 + Shew_0425 0.24 -0.1
478,699 - Shew_0425 0.44 -0.1
478,725 + Shew_0425 0.47 +0.0
478,725 + Shew_0425 0.47 +0.1
478,770 + Shew_0425 0.51 +0.1
478,805 + Shew_0425 0.54 -0.2
478,823 - Shew_0425 0.55 +0.3
478,823 - Shew_0425 0.55 +0.6
479,205 + -0.3
479,469 + Shew_0426 0.17 +0.3
479,471 - Shew_0426 0.17 +0.7
480,330 + +0.0
480,361 + -0.3
480,369 - +0.1
480,660 - Shew_0427 0.35 -0.1
480,798 - Shew_0427 0.50 -0.2
480,861 + Shew_0427 0.56 +0.2
481,020 - Shew_0427 0.73 +0.4
481,176 + Shew_0427 0.90 +0.3

Or see this region's nucleotide sequence