Experiment: Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2519 and Ga0059261_2520 are separated by 49 nucleotides Ga0059261_2520 and Ga0059261_2521 are separated by 22 nucleotides Ga0059261_2521 and Ga0059261_2522 are separated by 376 nucleotides
Ga0059261_2519: Ga0059261_2519 - aspartate kinase (EC 2.7.2.4), at 2,610,914 to 2,612,173
_2519
Ga0059261_2520: Ga0059261_2520 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 2,612,223 to 2,612,960
_2520
Ga0059261_2521: Ga0059261_2521 - hypothetical protein, at 2,612,983 to 2,613,543
_2521
Ga0059261_2522: Ga0059261_2522 - export-related chaperone protein CsaA, at 2,613,920 to 2,614,291
_2522
Position (kb)
2612
2613 Strain fitness (log2 ratio)
-2
-1
0
1 at 2612.212 kb on - strand at 2613.015 kb on + strand at 2613.015 kb on + strand at 2613.015 kb on + strand at 2613.015 kb on + strand at 2613.016 kb on - strand at 2613.133 kb on + strand, within Ga0059261_2521 at 2613.133 kb on + strand, within Ga0059261_2521 at 2613.133 kb on + strand, within Ga0059261_2521 at 2613.133 kb on + strand, within Ga0059261_2521 at 2613.134 kb on - strand, within Ga0059261_2521 at 2613.134 kb on - strand, within Ga0059261_2521 at 2613.231 kb on + strand, within Ga0059261_2521 at 2613.332 kb on + strand, within Ga0059261_2521 at 2613.332 kb on + strand, within Ga0059261_2521 at 2613.333 kb on - strand, within Ga0059261_2521 at 2613.368 kb on + strand, within Ga0059261_2521 at 2613.368 kb on + strand, within Ga0059261_2521 at 2613.368 kb on + strand, within Ga0059261_2521 at 2613.368 kb on + strand, within Ga0059261_2521 at 2613.368 kb on + strand, within Ga0059261_2521 at 2613.368 kb on + strand, within Ga0059261_2521 at 2613.369 kb on - strand, within Ga0059261_2521 at 2613.369 kb on - strand, within Ga0059261_2521 at 2613.369 kb on - strand, within Ga0059261_2521 at 2613.443 kb on + strand at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.444 kb on - strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.446 kb on + strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.447 kb on - strand, within Ga0059261_2521 at 2613.644 kb on - strand at 2613.662 kb on + strand at 2613.662 kb on + strand at 2613.662 kb on + strand at 2613.662 kb on + strand at 2613.662 kb on + strand at 2613.662 kb on + strand at 2613.663 kb on - strand at 2613.663 kb on - strand at 2613.721 kb on - strand at 2613.772 kb on + strand at 2613.772 kb on + strand at 2613.772 kb on + strand at 2613.772 kb on + strand at 2613.773 kb on - strand at 2613.773 kb on - strand at 2613.773 kb on - strand at 2613.773 kb on - strand at 2613.924 kb on + strand at 2613.924 kb on + strand at 2613.925 kb on - strand at 2613.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM remove 2,612,212 - -0.8 2,613,015 + -0.4 2,613,015 + +0.4 2,613,015 + +0.6 2,613,015 + -0.9 2,613,016 - -0.2 2,613,133 + Ga0059261_2521 0.27 +0.4 2,613,133 + Ga0059261_2521 0.27 +0.7 2,613,133 + Ga0059261_2521 0.27 -0.7 2,613,133 + Ga0059261_2521 0.27 +0.3 2,613,134 - Ga0059261_2521 0.27 -0.6 2,613,134 - Ga0059261_2521 0.27 -1.5 2,613,231 + Ga0059261_2521 0.44 -0.2 2,613,332 + Ga0059261_2521 0.62 +0.2 2,613,332 + Ga0059261_2521 0.62 -0.1 2,613,333 - Ga0059261_2521 0.62 +1.1 2,613,368 + Ga0059261_2521 0.69 +0.3 2,613,368 + Ga0059261_2521 0.69 -0.2 2,613,368 + Ga0059261_2521 0.69 -0.1 2,613,368 + Ga0059261_2521 0.69 +0.5 2,613,368 + Ga0059261_2521 0.69 +0.4 2,613,368 + Ga0059261_2521 0.69 +0.5 2,613,369 - Ga0059261_2521 0.69 -0.3 2,613,369 - Ga0059261_2521 0.69 -0.6 2,613,369 - Ga0059261_2521 0.69 -0.1 2,613,443 + -1.0 2,613,444 - Ga0059261_2521 0.82 -1.0 2,613,444 - Ga0059261_2521 0.82 +1.1 2,613,444 - Ga0059261_2521 0.82 -0.2 2,613,444 - Ga0059261_2521 0.82 -0.4 2,613,444 - Ga0059261_2521 0.82 -0.5 2,613,444 - Ga0059261_2521 0.82 +1.1 2,613,444 - Ga0059261_2521 0.82 +0.3 2,613,444 - Ga0059261_2521 0.82 +0.6 2,613,444 - Ga0059261_2521 0.82 -0.2 2,613,446 + Ga0059261_2521 0.83 +0.2 2,613,446 + Ga0059261_2521 0.83 +1.4 2,613,446 + Ga0059261_2521 0.83 -0.9 2,613,446 + Ga0059261_2521 0.83 -2.3 2,613,446 + Ga0059261_2521 0.83 +1.0 2,613,446 + Ga0059261_2521 0.83 -0.1 2,613,446 + Ga0059261_2521 0.83 -0.4 2,613,446 + Ga0059261_2521 0.83 +0.1 2,613,446 + Ga0059261_2521 0.83 -1.0 2,613,446 + Ga0059261_2521 0.83 -0.3 2,613,446 + Ga0059261_2521 0.83 +0.8 2,613,446 + Ga0059261_2521 0.83 +0.2 2,613,446 + Ga0059261_2521 0.83 +0.1 2,613,446 + Ga0059261_2521 0.83 +0.5 2,613,446 + Ga0059261_2521 0.83 +0.5 2,613,447 - Ga0059261_2521 0.83 -0.0 2,613,447 - Ga0059261_2521 0.83 +0.0 2,613,447 - Ga0059261_2521 0.83 -0.2 2,613,447 - +0.2 2,613,447 - Ga0059261_2521 0.83 -1.0 2,613,447 - Ga0059261_2521 0.83 +0.3 2,613,447 - Ga0059261_2521 0.83 +0.5 2,613,447 - Ga0059261_2521 0.83 -0.3 2,613,447 - Ga0059261_2521 0.83 -0.6 2,613,447 - Ga0059261_2521 0.83 -0.2 2,613,447 - Ga0059261_2521 0.83 -0.1 2,613,447 - Ga0059261_2521 0.83 -1.0 2,613,447 - Ga0059261_2521 0.83 +1.4 2,613,447 - Ga0059261_2521 0.83 +0.1 2,613,447 - Ga0059261_2521 0.83 +0.1 2,613,644 - -0.1 2,613,662 + +0.7 2,613,662 + -0.1 2,613,662 + -0.3 2,613,662 + +0.1 2,613,662 + +0.7 2,613,662 + +0.4 2,613,663 - -0.1 2,613,663 - -0.8 2,613,721 - -0.6 2,613,772 + -1.1 2,613,772 + +0.4 2,613,772 + -0.5 2,613,772 + +0.5 2,613,773 - +1.0 2,613,773 - -0.3 2,613,773 - +0.7 2,613,773 - +0.9 2,613,924 + +0.5 2,613,924 + -0.2 2,613,925 - +0.3 2,613,925 - +1.6
Or see this region's nucleotide sequence