Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1409

Experiment: Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1407 and Ga0059261_1408 are separated by 174 nucleotidesGa0059261_1408 and Ga0059261_1409 are separated by 33 nucleotidesGa0059261_1409 and Ga0059261_1410 overlap by 4 nucleotidesGa0059261_1410 and Ga0059261_1411 are separated by 177 nucleotides Ga0059261_1407: Ga0059261_1407 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 1,483,081 to 1,484,265 _1407 Ga0059261_1408: Ga0059261_1408 - Domain of unknown function (DUF4168), at 1,484,440 to 1,484,808 _1408 Ga0059261_1409: Ga0059261_1409 - hypothetical protein, at 1,484,842 to 1,485,306 _1409 Ga0059261_1410: Ga0059261_1410 - Fructose-2,6-bisphosphatase, at 1,485,303 to 1,485,932 _1410 Ga0059261_1411: Ga0059261_1411 - Opacity protein and related surface antigens, at 1,486,110 to 1,486,706 _1411 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1483.857 kb on + strand, within Ga0059261_1407at 1483.857 kb on + strand, within Ga0059261_1407at 1483.857 kb on + strand, within Ga0059261_1407at 1483.857 kb on + strand, within Ga0059261_1407at 1483.857 kb on + strand, within Ga0059261_1407at 1483.857 kb on + strand, within Ga0059261_1407at 1483.858 kb on - strand, within Ga0059261_1407at 1483.858 kb on - strand, within Ga0059261_1407at 1483.858 kb on - strand, within Ga0059261_1407at 1483.858 kb on - strand, within Ga0059261_1407at 1483.858 kb on - strand, within Ga0059261_1407at 1483.922 kb on + strand, within Ga0059261_1407at 1483.922 kb on + strand, within Ga0059261_1407at 1483.922 kb on + strand, within Ga0059261_1407at 1483.923 kb on - strand, within Ga0059261_1407at 1483.923 kb on - strand, within Ga0059261_1407at 1483.923 kb on - strand, within Ga0059261_1407at 1483.923 kb on - strandat 1483.923 kb on - strand, within Ga0059261_1407at 1484.087 kb on + strand, within Ga0059261_1407at 1484.087 kb on + strand, within Ga0059261_1407at 1484.087 kb on + strand, within Ga0059261_1407at 1484.087 kb on + strand, within Ga0059261_1407at 1484.088 kb on - strand, within Ga0059261_1407at 1484.088 kb on - strand, within Ga0059261_1407at 1484.088 kb on - strand, within Ga0059261_1407at 1484.088 kb on - strand, within Ga0059261_1407at 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.196 kb on + strandat 1484.197 kb on - strandat 1484.197 kb on - strandat 1484.197 kb on - strandat 1484.197 kb on - strandat 1484.300 kb on + strandat 1484.300 kb on + strandat 1484.300 kb on + strandat 1484.300 kb on + strandat 1484.300 kb on + strandat 1484.301 kb on - strandat 1484.301 kb on - strandat 1484.301 kb on - strandat 1484.301 kb on - strandat 1484.301 kb on - strandat 1484.301 kb on - strandat 1484.439 kb on + strandat 1484.440 kb on - strandat 1484.440 kb on - strandat 1484.440 kb on - strandat 1484.676 kb on - strand, within Ga0059261_1408at 1484.676 kb on - strand, within Ga0059261_1408at 1484.793 kb on + strandat 1484.793 kb on + strandat 1484.793 kb on + strandat 1484.793 kb on + strandat 1484.794 kb on - strandat 1484.794 kb on - strandat 1484.794 kb on - strandat 1484.807 kb on - strandat 1484.843 kb on + strandat 1484.844 kb on - strandat 1484.844 kb on - strandat 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.907 kb on + strand, within Ga0059261_1409at 1484.907 kb on + strand, within Ga0059261_1409at 1484.907 kb on + strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1485.194 kb on + strand, within Ga0059261_1409at 1485.195 kb on - strand, within Ga0059261_1409at 1485.195 kb on - strand, within Ga0059261_1409at 1485.462 kb on - strand, within Ga0059261_1410at 1485.462 kb on - strand, within Ga0059261_1410at 1485.544 kb on + strand, within Ga0059261_1410at 1485.545 kb on - strand, within Ga0059261_1410at 1485.545 kb on - strand, within Ga0059261_1410at 1485.545 kb on - strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.623 kb on - strand, within Ga0059261_1410at 1485.623 kb on - strand, within Ga0059261_1410at 1485.626 kb on - strand, within Ga0059261_1410at 1485.626 kb on - strand, within Ga0059261_1410at 1485.846 kb on - strand, within Ga0059261_1410at 1485.970 kb on - strandat 1485.985 kb on + strandat 1485.986 kb on - strandat 1485.986 kb on - strandat 1485.986 kb on - strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.092 kb on - strandat 1486.092 kb on - strandat 1486.092 kb on - strandat 1486.092 kb on - strandat 1486.097 kb on + strandat 1486.098 kb on - strandat 1486.098 kb on - strandat 1486.105 kb on + strandat 1486.105 kb on + strandat 1486.105 kb on + strandat 1486.105 kb on + strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.109 kb on + strandat 1486.110 kb on - strandat 1486.110 kb on - strandat 1486.115 kb on + strandat 1486.116 kb on - strandat 1486.215 kb on + strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.290 kb on + strand, within Ga0059261_1411at 1486.291 kb on - strand, within Ga0059261_1411at 1486.291 kb on - strand, within Ga0059261_1411

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
remove
1,483,857 + Ga0059261_1407 0.65 -0.8
1,483,857 + Ga0059261_1407 0.65 +0.2
1,483,857 + Ga0059261_1407 0.65 +0.0
1,483,857 + Ga0059261_1407 0.65 +0.4
1,483,857 + Ga0059261_1407 0.65 -0.4
1,483,857 + Ga0059261_1407 0.65 -2.4
1,483,858 - Ga0059261_1407 0.66 -0.0
1,483,858 - Ga0059261_1407 0.66 -0.3
1,483,858 - Ga0059261_1407 0.66 +0.6
1,483,858 - Ga0059261_1407 0.66 -1.4
1,483,858 - Ga0059261_1407 0.66 -0.2
1,483,922 + Ga0059261_1407 0.71 -0.1
1,483,922 + Ga0059261_1407 0.71 +0.7
1,483,922 + Ga0059261_1407 0.71 +0.7
1,483,923 - Ga0059261_1407 0.71 +1.2
1,483,923 - Ga0059261_1407 0.71 -0.3
1,483,923 - Ga0059261_1407 0.71 -0.4
1,483,923 - +1.6
1,483,923 - Ga0059261_1407 0.71 +1.3
1,484,087 + Ga0059261_1407 0.85 -2.1
1,484,087 + Ga0059261_1407 0.85 +0.3
1,484,087 + Ga0059261_1407 0.85 +0.6
1,484,087 + Ga0059261_1407 0.85 -0.7
1,484,088 - Ga0059261_1407 0.85 +0.6
1,484,088 - Ga0059261_1407 0.85 -1.0
1,484,088 - Ga0059261_1407 0.85 -0.2
1,484,088 - Ga0059261_1407 0.85 -0.2
1,484,196 + +0.1
1,484,196 + -1.1
1,484,196 + +0.0
1,484,196 + -0.6
1,484,196 + -0.9
1,484,196 + -0.1
1,484,196 + -0.3
1,484,196 + -1.0
1,484,197 - -0.4
1,484,197 - +0.2
1,484,197 - +0.1
1,484,197 - -2.3
1,484,300 + -2.2
1,484,300 + +0.4
1,484,300 + -0.4
1,484,300 + -0.1
1,484,300 + -0.5
1,484,301 - +0.4
1,484,301 - -0.4
1,484,301 - +0.1
1,484,301 - +0.5
1,484,301 - -0.1
1,484,301 - +1.2
1,484,439 + -0.0
1,484,440 - +0.3
1,484,440 - +0.0
1,484,440 - -0.8
1,484,676 - Ga0059261_1408 0.64 -0.3
1,484,676 - Ga0059261_1408 0.64 +0.3
1,484,793 + +0.6
1,484,793 + -1.5
1,484,793 + +0.2
1,484,793 + -0.2
1,484,794 - +0.5
1,484,794 - +1.3
1,484,794 - +0.2
1,484,807 - +0.4
1,484,843 + -0.1
1,484,844 - +1.1
1,484,844 - -0.1
1,484,903 + Ga0059261_1409 0.13 +0.2
1,484,903 + Ga0059261_1409 0.13 +1.1
1,484,903 + Ga0059261_1409 0.13 -0.2
1,484,903 + Ga0059261_1409 0.13 +0.5
1,484,903 + Ga0059261_1409 0.13 +0.1
1,484,903 + Ga0059261_1409 0.13 +0.4
1,484,903 + Ga0059261_1409 0.13 +0.6
1,484,903 + Ga0059261_1409 0.13 +1.3
1,484,903 + Ga0059261_1409 0.13 +1.2
1,484,903 + Ga0059261_1409 0.13 +0.3
1,484,904 - Ga0059261_1409 0.13 +0.2
1,484,904 - Ga0059261_1409 0.13 +0.2
1,484,904 - Ga0059261_1409 0.13 -0.8
1,484,904 - Ga0059261_1409 0.13 +0.3
1,484,904 - Ga0059261_1409 0.13 +0.5
1,484,907 + Ga0059261_1409 0.14 +0.8
1,484,907 + Ga0059261_1409 0.14 +1.5
1,484,907 + Ga0059261_1409 0.14 +0.6
1,484,908 - Ga0059261_1409 0.14 +0.5
1,484,908 - Ga0059261_1409 0.14 +0.6
1,484,908 - Ga0059261_1409 0.14 +0.7
1,484,908 - Ga0059261_1409 0.14 +0.5
1,485,194 + Ga0059261_1409 0.76 -0.1
1,485,195 - Ga0059261_1409 0.76 +0.3
1,485,195 - Ga0059261_1409 0.76 +2.2
1,485,462 - Ga0059261_1410 0.25 +0.6
1,485,462 - Ga0059261_1410 0.25 -0.3
1,485,544 + Ga0059261_1410 0.38 -0.4
1,485,545 - Ga0059261_1410 0.38 -0.6
1,485,545 - Ga0059261_1410 0.38 +0.1
1,485,545 - Ga0059261_1410 0.38 +0.0
1,485,622 + Ga0059261_1410 0.51 +0.6
1,485,622 + Ga0059261_1410 0.51 +0.6
1,485,622 + Ga0059261_1410 0.51 -0.5
1,485,622 + Ga0059261_1410 0.51 +0.8
1,485,622 + Ga0059261_1410 0.51 +1.2
1,485,623 - Ga0059261_1410 0.51 +0.8
1,485,623 - Ga0059261_1410 0.51 -1.4
1,485,626 - Ga0059261_1410 0.51 -0.2
1,485,626 - Ga0059261_1410 0.51 +0.2
1,485,846 - Ga0059261_1410 0.86 -0.3
1,485,970 - +0.0
1,485,985 + +0.4
1,485,986 - -0.9
1,485,986 - -0.3
1,485,986 - +0.2
1,486,091 + -1.3
1,486,091 + -0.8
1,486,091 + -0.4
1,486,091 + -0.9
1,486,091 + +0.1
1,486,092 - -2.1
1,486,092 - -0.3
1,486,092 - -2.7
1,486,092 - -1.2
1,486,097 + -1.1
1,486,098 - -0.9
1,486,098 - -0.2
1,486,105 + -1.0
1,486,105 + -1.5
1,486,105 + -0.5
1,486,105 + -1.9
1,486,106 - -0.4
1,486,106 - -0.7
1,486,106 - -0.7
1,486,106 - -0.4
1,486,106 - -0.9
1,486,109 + -0.4
1,486,110 - -0.7
1,486,110 - -0.2
1,486,115 + -0.5
1,486,116 - -2.4
1,486,215 + Ga0059261_1411 0.18 -1.4
1,486,216 - Ga0059261_1411 0.18 -1.8
1,486,216 - Ga0059261_1411 0.18 -0.2
1,486,216 - Ga0059261_1411 0.18 -0.5
1,486,216 - Ga0059261_1411 0.18 -1.5
1,486,272 + Ga0059261_1411 0.27 -1.1
1,486,272 + Ga0059261_1411 0.27 -0.9
1,486,272 + Ga0059261_1411 0.27 +0.4
1,486,272 + Ga0059261_1411 0.27 -1.1
1,486,272 + Ga0059261_1411 0.27 -3.0
1,486,273 - Ga0059261_1411 0.27 +0.2
1,486,273 - Ga0059261_1411 0.27 -0.7
1,486,273 - Ga0059261_1411 0.27 -0.3
1,486,273 - Ga0059261_1411 0.27 -0.9
1,486,273 - Ga0059261_1411 0.27 -1.5
1,486,273 - Ga0059261_1411 0.27 -0.8
1,486,273 - Ga0059261_1411 0.27 -0.3
1,486,273 - Ga0059261_1411 0.27 -0.8
1,486,273 - Ga0059261_1411 0.27 -0.9
1,486,273 - Ga0059261_1411 0.27 -0.2
1,486,273 - Ga0059261_1411 0.27 -0.4
1,486,273 - Ga0059261_1411 0.27 -1.7
1,486,290 + Ga0059261_1411 0.30 -1.9
1,486,291 - Ga0059261_1411 0.30 -1.0
1,486,291 - Ga0059261_1411 0.30 -0.4

Or see this region's nucleotide sequence