Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1190

Experiment: Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1188 and Ga0059261_1189 are separated by 0 nucleotidesGa0059261_1189 and Ga0059261_1190 are separated by 111 nucleotidesGa0059261_1190 and Ga0059261_1191 overlap by 4 nucleotidesGa0059261_1191 and Ga0059261_1192 are separated by 95 nucleotides Ga0059261_1188: Ga0059261_1188 - hypothetical protein, at 1,232,182 to 1,233,138 _1188 Ga0059261_1189: Ga0059261_1189 - hypothetical protein, at 1,233,139 to 1,233,278 _1189 Ga0059261_1190: Ga0059261_1190 - hypothetical protein, at 1,233,390 to 1,234,088 _1190 Ga0059261_1191: Ga0059261_1191 - RNA polymerase sigma factor, sigma-70 family, at 1,234,085 to 1,234,567 _1191 Ga0059261_1192: Ga0059261_1192 - Subtilase family, at 1,234,663 to 1,235,925 _1192 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.521 kb on + strand, within Ga0059261_1188at 1232.522 kb on - strand, within Ga0059261_1188at 1232.522 kb on - strand, within Ga0059261_1188at 1232.522 kb on - strand, within Ga0059261_1188at 1232.598 kb on + strand, within Ga0059261_1188at 1232.603 kb on - strand, within Ga0059261_1188at 1232.714 kb on + strand, within Ga0059261_1188at 1232.714 kb on + strand, within Ga0059261_1188at 1232.714 kb on + strand, within Ga0059261_1188at 1232.714 kb on + strand, within Ga0059261_1188at 1232.714 kb on + strand, within Ga0059261_1188at 1232.715 kb on - strand, within Ga0059261_1188at 1232.715 kb on - strand, within Ga0059261_1188at 1232.715 kb on - strand, within Ga0059261_1188at 1232.715 kb on - strand, within Ga0059261_1188at 1232.715 kb on - strand, within Ga0059261_1188at 1232.729 kb on + strand, within Ga0059261_1188at 1232.730 kb on - strand, within Ga0059261_1188at 1232.730 kb on - strand, within Ga0059261_1188at 1232.741 kb on + strand, within Ga0059261_1188at 1232.741 kb on + strand, within Ga0059261_1188at 1232.741 kb on + strand, within Ga0059261_1188at 1232.742 kb on - strand, within Ga0059261_1188at 1232.742 kb on - strand, within Ga0059261_1188at 1232.804 kb on + strand, within Ga0059261_1188at 1232.805 kb on - strand, within Ga0059261_1188at 1232.805 kb on - strand, within Ga0059261_1188at 1232.805 kb on - strand, within Ga0059261_1188at 1232.816 kb on - strand, within Ga0059261_1188at 1232.819 kb on - strand, within Ga0059261_1188at 1232.924 kb on + strand, within Ga0059261_1188at 1232.924 kb on + strand, within Ga0059261_1188at 1232.925 kb on - strand, within Ga0059261_1188at 1233.151 kb on + strandat 1233.151 kb on + strandat 1233.151 kb on + strandat 1233.151 kb on + strandat 1233.152 kb on - strandat 1233.152 kb on - strandat 1233.207 kb on + strand, within Ga0059261_1189at 1233.210 kb on + strand, within Ga0059261_1189at 1233.211 kb on - strand, within Ga0059261_1189at 1233.211 kb on - strand, within Ga0059261_1189at 1233.211 kb on - strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.212 kb on + strand, within Ga0059261_1189at 1233.213 kb on - strand, within Ga0059261_1189at 1233.213 kb on - strand, within Ga0059261_1189at 1233.213 kb on - strand, within Ga0059261_1189at 1233.213 kb on - strand, within Ga0059261_1189at 1233.222 kb on + strand, within Ga0059261_1189at 1233.222 kb on + strand, within Ga0059261_1189at 1233.250 kb on + strand, within Ga0059261_1189at 1233.250 kb on + strand, within Ga0059261_1189at 1233.259 kb on + strand, within Ga0059261_1189at 1233.260 kb on - strand, within Ga0059261_1189at 1233.260 kb on - strand, within Ga0059261_1189at 1233.320 kb on + strandat 1233.320 kb on + strandat 1233.321 kb on - strandat 1233.359 kb on + strandat 1233.360 kb on - strandat 1233.374 kb on + strandat 1233.391 kb on + strandat 1233.392 kb on - strandat 1233.527 kb on + strand, within Ga0059261_1190at 1233.527 kb on + strand, within Ga0059261_1190at 1233.528 kb on - strand, within Ga0059261_1190at 1233.528 kb on - strand, within Ga0059261_1190at 1233.528 kb on - strand, within Ga0059261_1190at 1233.528 kb on - strand, within Ga0059261_1190at 1233.528 kb on - strand, within Ga0059261_1190at 1233.535 kb on + strand, within Ga0059261_1190at 1233.535 kb on + strand, within Ga0059261_1190at 1233.535 kb on + strand, within Ga0059261_1190at 1233.535 kb on + strand, within Ga0059261_1190at 1233.536 kb on - strand, within Ga0059261_1190at 1233.536 kb on - strand, within Ga0059261_1190at 1233.536 kb on - strand, within Ga0059261_1190at 1233.613 kb on + strand, within Ga0059261_1190at 1233.956 kb on + strand, within Ga0059261_1190at 1233.956 kb on + strand, within Ga0059261_1190at 1234.057 kb on + strandat 1234.057 kb on + strandat 1234.058 kb on - strandat 1234.188 kb on + strand, within Ga0059261_1191at 1234.188 kb on + strand, within Ga0059261_1191at 1234.188 kb on + strand, within Ga0059261_1191at 1234.189 kb on - strand, within Ga0059261_1191at 1234.398 kb on + strand, within Ga0059261_1191at 1234.398 kb on + strand, within Ga0059261_1191at 1234.398 kb on + strand, within Ga0059261_1191at 1234.398 kb on + strand, within Ga0059261_1191at 1234.398 kb on + strand, within Ga0059261_1191at 1234.398 kb on + strand, within Ga0059261_1191at 1234.399 kb on - strand, within Ga0059261_1191at 1234.399 kb on - strand, within Ga0059261_1191at 1234.399 kb on - strand, within Ga0059261_1191at 1234.399 kb on - strand, within Ga0059261_1191at 1234.399 kb on - strand, within Ga0059261_1191at 1234.650 kb on + strandat 1234.650 kb on + strandat 1234.650 kb on + strandat 1234.650 kb on + strandat 1234.650 kb on + strandat 1234.651 kb on - strandat 1234.651 kb on - strandat 1234.651 kb on - strandat 1234.651 kb on - strandat 1235.032 kb on + strand, within Ga0059261_1192

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
remove
1,232,521 + Ga0059261_1188 0.35 +0.1
1,232,521 + Ga0059261_1188 0.35 +0.0
1,232,521 + Ga0059261_1188 0.35 -0.8
1,232,521 + Ga0059261_1188 0.35 +0.3
1,232,521 + Ga0059261_1188 0.35 +0.4
1,232,521 + Ga0059261_1188 0.35 +0.8
1,232,521 + Ga0059261_1188 0.35 +0.1
1,232,521 + Ga0059261_1188 0.35 +0.2
1,232,521 + Ga0059261_1188 0.35 -0.9
1,232,522 - Ga0059261_1188 0.36 -0.0
1,232,522 - Ga0059261_1188 0.36 +1.0
1,232,522 - Ga0059261_1188 0.36 -1.1
1,232,598 + Ga0059261_1188 0.43 +0.0
1,232,603 - Ga0059261_1188 0.44 -1.4
1,232,714 + Ga0059261_1188 0.56 +0.8
1,232,714 + Ga0059261_1188 0.56 -0.6
1,232,714 + Ga0059261_1188 0.56 +0.0
1,232,714 + Ga0059261_1188 0.56 +0.3
1,232,714 + Ga0059261_1188 0.56 -0.7
1,232,715 - Ga0059261_1188 0.56 +0.1
1,232,715 - Ga0059261_1188 0.56 -0.6
1,232,715 - Ga0059261_1188 0.56 -1.0
1,232,715 - Ga0059261_1188 0.56 -0.7
1,232,715 - Ga0059261_1188 0.56 +0.3
1,232,729 + Ga0059261_1188 0.57 -0.5
1,232,730 - Ga0059261_1188 0.57 -0.3
1,232,730 - Ga0059261_1188 0.57 +1.0
1,232,741 + Ga0059261_1188 0.58 +1.0
1,232,741 + Ga0059261_1188 0.58 +0.4
1,232,741 + Ga0059261_1188 0.58 +0.2
1,232,742 - Ga0059261_1188 0.59 +0.5
1,232,742 - Ga0059261_1188 0.59 -0.1
1,232,804 + Ga0059261_1188 0.65 +0.2
1,232,805 - Ga0059261_1188 0.65 -0.7
1,232,805 - Ga0059261_1188 0.65 +0.0
1,232,805 - Ga0059261_1188 0.65 +0.4
1,232,816 - Ga0059261_1188 0.66 +0.4
1,232,819 - Ga0059261_1188 0.67 +0.6
1,232,924 + Ga0059261_1188 0.78 +0.6
1,232,924 + Ga0059261_1188 0.78 -0.4
1,232,925 - Ga0059261_1188 0.78 +0.1
1,233,151 + +0.7
1,233,151 + +0.1
1,233,151 + +1.3
1,233,151 + -0.5
1,233,152 - -0.4
1,233,152 - -0.5
1,233,207 + Ga0059261_1189 0.49 -0.4
1,233,210 + Ga0059261_1189 0.51 +0.8
1,233,211 - Ga0059261_1189 0.51 +0.5
1,233,211 - Ga0059261_1189 0.51 -0.1
1,233,211 - Ga0059261_1189 0.51 -0.3
1,233,212 + Ga0059261_1189 0.52 +0.1
1,233,212 + Ga0059261_1189 0.52 -0.4
1,233,212 + Ga0059261_1189 0.52 +0.2
1,233,212 + Ga0059261_1189 0.52 -0.2
1,233,212 + Ga0059261_1189 0.52 +0.6
1,233,212 + Ga0059261_1189 0.52 -0.6
1,233,212 + Ga0059261_1189 0.52 +0.4
1,233,212 + Ga0059261_1189 0.52 -0.8
1,233,213 - Ga0059261_1189 0.53 -0.2
1,233,213 - Ga0059261_1189 0.53 +0.9
1,233,213 - Ga0059261_1189 0.53 -0.3
1,233,213 - Ga0059261_1189 0.53 +0.5
1,233,222 + Ga0059261_1189 0.59 -0.2
1,233,222 + Ga0059261_1189 0.59 -0.0
1,233,250 + Ga0059261_1189 0.79 -1.3
1,233,250 + Ga0059261_1189 0.79 +0.6
1,233,259 + Ga0059261_1189 0.86 +0.0
1,233,260 - Ga0059261_1189 0.86 -0.2
1,233,260 - Ga0059261_1189 0.86 +0.7
1,233,320 + -3.0
1,233,320 + +0.2
1,233,321 - +1.6
1,233,359 + -0.4
1,233,360 - -0.3
1,233,374 + +0.0
1,233,391 + -0.5
1,233,392 - -0.7
1,233,527 + Ga0059261_1190 0.20 +0.2
1,233,527 + Ga0059261_1190 0.20 +0.7
1,233,528 - Ga0059261_1190 0.20 +0.5
1,233,528 - Ga0059261_1190 0.20 -2.2
1,233,528 - Ga0059261_1190 0.20 +0.4
1,233,528 - Ga0059261_1190 0.20 -0.1
1,233,528 - Ga0059261_1190 0.20 -0.1
1,233,535 + Ga0059261_1190 0.21 +0.2
1,233,535 + Ga0059261_1190 0.21 -1.2
1,233,535 + Ga0059261_1190 0.21 +0.4
1,233,535 + Ga0059261_1190 0.21 +0.4
1,233,536 - Ga0059261_1190 0.21 +1.2
1,233,536 - Ga0059261_1190 0.21 -0.1
1,233,536 - Ga0059261_1190 0.21 -1.3
1,233,613 + Ga0059261_1190 0.32 +0.2
1,233,956 + Ga0059261_1190 0.81 +1.9
1,233,956 + Ga0059261_1190 0.81 -0.7
1,234,057 + +0.3
1,234,057 + -0.2
1,234,058 - +0.4
1,234,188 + Ga0059261_1191 0.21 -0.4
1,234,188 + Ga0059261_1191 0.21 -0.4
1,234,188 + Ga0059261_1191 0.21 -0.4
1,234,189 - Ga0059261_1191 0.22 +0.3
1,234,398 + Ga0059261_1191 0.65 -0.4
1,234,398 + Ga0059261_1191 0.65 +1.2
1,234,398 + Ga0059261_1191 0.65 +0.0
1,234,398 + Ga0059261_1191 0.65 -0.7
1,234,398 + Ga0059261_1191 0.65 +0.0
1,234,398 + Ga0059261_1191 0.65 -0.2
1,234,399 - Ga0059261_1191 0.65 -0.1
1,234,399 - Ga0059261_1191 0.65 -1.7
1,234,399 - Ga0059261_1191 0.65 -1.3
1,234,399 - Ga0059261_1191 0.65 +0.2
1,234,399 - Ga0059261_1191 0.65 -0.1
1,234,650 + -0.3
1,234,650 + -0.5
1,234,650 + -0.1
1,234,650 + -0.5
1,234,650 + -0.2
1,234,651 - +0.2
1,234,651 - -0.4
1,234,651 - -0.5
1,234,651 - -0.3
1,235,032 + Ga0059261_1192 0.29 +0.4

Or see this region's nucleotide sequence