Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2738 and Ac3H11_2739 overlap by 4 nucleotides Ac3H11_2739 and Ac3H11_2740 overlap by 4 nucleotides Ac3H11_2740 and Ac3H11_2741 are separated by 287 nucleotides
Ac3H11_2738 - Glutathione peroxidase family protein, at 1,038,150 to 1,038,698
_2738
Ac3H11_2739 - FIG00481831: hypothetical protein, at 1,038,695 to 1,039,228
_2739
Ac3H11_2740 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 1,039,225 to 1,040,109
_2740
Ac3H11_2741 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 1,040,397 to 1,041,302
_2741
Position (kb)
1039
1040
1041 Strain fitness (log2 ratio)
-2
-1
0
1 at 1038.377 kb on - strand, within Ac3H11_2738 at 1038.571 kb on + strand, within Ac3H11_2738 at 1038.704 kb on + strand at 1038.705 kb on - strand at 1038.715 kb on - strand at 1038.868 kb on - strand, within Ac3H11_2739 at 1039.289 kb on + strand at 1039.289 kb on + strand at 1039.290 kb on - strand at 1040.179 kb on + strand at 1040.200 kb on - strand at 1040.280 kb on + strand at 1040.459 kb on - strand at 1040.511 kb on + strand, within Ac3H11_2741 at 1040.512 kb on - strand, within Ac3H11_2741 at 1041.084 kb on - strand, within Ac3H11_2741
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,038,377 - Ac3H11_2738 0.41 -0.5 1,038,571 + Ac3H11_2738 0.77 -0.4 1,038,704 + +1.5 1,038,705 - +0.7 1,038,715 - -0.7 1,038,868 - Ac3H11_2739 0.32 +0.1 1,039,289 + -0.9 1,039,289 + -0.2 1,039,290 - +0.3 1,040,179 + +0.7 1,040,200 - -0.1 1,040,280 + -0.0 1,040,459 - -0.8 1,040,511 + Ac3H11_2741 0.13 -0.5 1,040,512 - Ac3H11_2741 0.13 -0.3 1,041,084 - Ac3H11_2741 0.76 -2.0
Or see this region's nucleotide sequence