Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2733

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2731 and Ac3H11_2732 overlap by 4 nucleotidesAc3H11_2732 and Ac3H11_2733 are separated by 55 nucleotidesAc3H11_2733 and Ac3H11_2734 overlap by 7 nucleotidesAc3H11_2734 and Ac3H11_2735 are separated by 1 nucleotides Ac3H11_2731 - hypothetical protein, at 1,032,526 to 1,032,951 _2731 Ac3H11_2732 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,032,948 to 1,033,784 _2732 Ac3H11_2733 - MFS transporter, at 1,033,840 to 1,035,060 _2733 Ac3H11_2734 - Dihydroneopterin aldolase (EC 4.1.2.25), at 1,035,054 to 1,035,482 _2734 Ac3H11_2735 - FolM Alternative dihydrofolate reductase 1, at 1,035,484 to 1,036,209 _2735 Position (kb) 1033 1034 1035 1036Strain fitness (log2 ratio) -2 -1 0 1 2at 1032.866 kb on - strand, within Ac3H11_2731at 1033.232 kb on + strand, within Ac3H11_2732at 1033.232 kb on + strand, within Ac3H11_2732at 1033.232 kb on + strand, within Ac3H11_2732at 1033.356 kb on + strand, within Ac3H11_2732at 1033.357 kb on - strand, within Ac3H11_2732at 1033.450 kb on - strand, within Ac3H11_2732at 1033.450 kb on - strand, within Ac3H11_2732at 1033.594 kb on + strand, within Ac3H11_2732at 1033.594 kb on + strand, within Ac3H11_2732at 1033.595 kb on - strand, within Ac3H11_2732at 1033.595 kb on - strand, within Ac3H11_2732at 1033.683 kb on + strand, within Ac3H11_2732at 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.702 kb on - strandat 1033.949 kb on + strandat 1034.007 kb on - strand, within Ac3H11_2733at 1034.396 kb on + strand, within Ac3H11_2733at 1034.409 kb on - strand, within Ac3H11_2733at 1034.620 kb on + strand, within Ac3H11_2733at 1034.621 kb on - strand, within Ac3H11_2733at 1034.621 kb on - strand, within Ac3H11_2733at 1034.621 kb on - strand, within Ac3H11_2733at 1034.897 kb on - strand, within Ac3H11_2733at 1035.011 kb on + strandat 1035.012 kb on - strandat 1035.139 kb on + strand, within Ac3H11_2734at 1035.178 kb on - strand, within Ac3H11_2734at 1035.178 kb on - strand, within Ac3H11_2734at 1035.178 kb on - strand, within Ac3H11_2734at 1035.237 kb on + strand, within Ac3H11_2734at 1035.237 kb on + strand, within Ac3H11_2734at 1035.237 kb on + strand, within Ac3H11_2734at 1035.237 kb on + strand, within Ac3H11_2734at 1035.237 kb on + strand, within Ac3H11_2734at 1035.237 kb on + strand, within Ac3H11_2734at 1035.238 kb on - strand, within Ac3H11_2734at 1035.238 kb on - strand, within Ac3H11_2734at 1035.239 kb on + strand, within Ac3H11_2734at 1035.239 kb on + strand, within Ac3H11_2734at 1035.239 kb on + strand, within Ac3H11_2734at 1035.239 kb on + strand, within Ac3H11_2734at 1035.239 kb on + strand, within Ac3H11_2734at 1035.239 kb on + strand, within Ac3H11_2734at 1035.240 kb on - strand, within Ac3H11_2734at 1035.240 kb on - strand, within Ac3H11_2734at 1035.240 kb on - strand, within Ac3H11_2734at 1035.240 kb on - strand, within Ac3H11_2734at 1035.240 kb on - strand, within Ac3H11_2734at 1035.343 kb on + strand, within Ac3H11_2734at 1035.344 kb on - strand, within Ac3H11_2734at 1035.344 kb on - strand, within Ac3H11_2734at 1035.360 kb on - strand, within Ac3H11_2734at 1035.360 kb on - strand, within Ac3H11_2734at 1035.360 kb on - strand, within Ac3H11_2734at 1035.728 kb on - strand, within Ac3H11_2735at 1035.801 kb on - strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.891 kb on - strand, within Ac3H11_2735at 1035.891 kb on - strand, within Ac3H11_2735at 1035.892 kb on + strand, within Ac3H11_2735at 1035.893 kb on - strand, within Ac3H11_2735at 1035.893 kb on - strand, within Ac3H11_2735

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,032,866 - Ac3H11_2731 0.80 -0.8
1,033,232 + Ac3H11_2732 0.34 -1.1
1,033,232 + Ac3H11_2732 0.34 -1.2
1,033,232 + Ac3H11_2732 0.34 +0.3
1,033,356 + Ac3H11_2732 0.49 +0.8
1,033,357 - Ac3H11_2732 0.49 -0.2
1,033,450 - Ac3H11_2732 0.60 -1.1
1,033,450 - Ac3H11_2732 0.60 -1.7
1,033,594 + Ac3H11_2732 0.77 +1.2
1,033,594 + Ac3H11_2732 0.77 +0.4
1,033,595 - Ac3H11_2732 0.77 -0.8
1,033,595 - Ac3H11_2732 0.77 -0.0
1,033,683 + Ac3H11_2732 0.88 +0.7
1,033,701 + +0.4
1,033,701 + -0.7
1,033,701 + -1.7
1,033,701 + +1.6
1,033,701 + +0.7
1,033,702 - -0.8
1,033,949 + +0.6
1,034,007 - Ac3H11_2733 0.14 -1.9
1,034,396 + Ac3H11_2733 0.46 -1.2
1,034,409 - Ac3H11_2733 0.47 -0.3
1,034,620 + Ac3H11_2733 0.64 -0.6
1,034,621 - Ac3H11_2733 0.64 +0.8
1,034,621 - Ac3H11_2733 0.64 -0.2
1,034,621 - Ac3H11_2733 0.64 -0.1
1,034,897 - Ac3H11_2733 0.87 +0.0
1,035,011 + +1.8
1,035,012 - +0.3
1,035,139 + Ac3H11_2734 0.20 -0.4
1,035,178 - Ac3H11_2734 0.29 +0.1
1,035,178 - Ac3H11_2734 0.29 +0.2
1,035,178 - Ac3H11_2734 0.29 -0.2
1,035,237 + Ac3H11_2734 0.43 -0.6
1,035,237 + Ac3H11_2734 0.43 -0.5
1,035,237 + Ac3H11_2734 0.43 -1.9
1,035,237 + Ac3H11_2734 0.43 -0.1
1,035,237 + Ac3H11_2734 0.43 +0.0
1,035,237 + Ac3H11_2734 0.43 +0.0
1,035,238 - Ac3H11_2734 0.43 +0.2
1,035,238 - Ac3H11_2734 0.43 -0.2
1,035,239 + Ac3H11_2734 0.43 +0.0
1,035,239 + Ac3H11_2734 0.43 +0.5
1,035,239 + Ac3H11_2734 0.43 +0.4
1,035,239 + Ac3H11_2734 0.43 +0.8
1,035,239 + Ac3H11_2734 0.43 +0.1
1,035,239 + Ac3H11_2734 0.43 -0.4
1,035,240 - Ac3H11_2734 0.43 +0.3
1,035,240 - Ac3H11_2734 0.43 -0.1
1,035,240 - Ac3H11_2734 0.43 +0.9
1,035,240 - Ac3H11_2734 0.43 -1.2
1,035,240 - Ac3H11_2734 0.43 +1.3
1,035,343 + Ac3H11_2734 0.67 +1.1
1,035,344 - Ac3H11_2734 0.68 +0.4
1,035,344 - Ac3H11_2734 0.68 -0.5
1,035,360 - Ac3H11_2734 0.71 +0.7
1,035,360 - Ac3H11_2734 0.71 +0.1
1,035,360 - Ac3H11_2734 0.71 +0.6
1,035,728 - Ac3H11_2735 0.34 +1.6
1,035,801 - Ac3H11_2735 0.44 -0.1
1,035,890 + Ac3H11_2735 0.56 +1.1
1,035,890 + Ac3H11_2735 0.56 +1.0
1,035,890 + Ac3H11_2735 0.56 +0.4
1,035,890 + Ac3H11_2735 0.56 -0.6
1,035,891 - Ac3H11_2735 0.56 +0.3
1,035,891 - Ac3H11_2735 0.56 +0.6
1,035,892 + Ac3H11_2735 0.56 +2.2
1,035,893 - Ac3H11_2735 0.56 +1.0
1,035,893 - Ac3H11_2735 0.56 -0.0

Or see this region's nucleotide sequence