Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16580

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS16570 and ABZR86_RS16575 are separated by 5 nucleotidesABZR86_RS16575 and ABZR86_RS16580 are separated by 58 nucleotidesABZR86_RS16580 and ABZR86_RS16585 are separated by 18 nucleotidesABZR86_RS16585 and ABZR86_RS16590 are separated by 307 nucleotides ABZR86_RS16570: ABZR86_RS16570 - glutathione S-transferase family protein, at 3,741,483 to 3,742,169 _RS16570 ABZR86_RS16575: ABZR86_RS16575 - hypothetical protein, at 3,742,175 to 3,742,717 _RS16575 ABZR86_RS16580: ABZR86_RS16580 - Pr6Pr family membrane protein, at 3,742,776 to 3,743,435 _RS16580 ABZR86_RS16585: ABZR86_RS16585 - TMEM175 family protein, at 3,743,454 to 3,744,095 _RS16585 ABZR86_RS16590: ABZR86_RS16590 - RHS repeat-associated core domain-containing protein, at 3,744,403 to 3,745,272 _RS16590 Position (kb) 3742 3743 3744Strain fitness (log2 ratio) -3 -2 -1 0 1at 3741.966 kb on + strand, within ABZR86_RS16570at 3741.982 kb on - strand, within ABZR86_RS16570at 3741.996 kb on + strand, within ABZR86_RS16570at 3741.996 kb on + strand, within ABZR86_RS16570at 3741.997 kb on - strand, within ABZR86_RS16570at 3741.997 kb on - strand, within ABZR86_RS16570at 3741.997 kb on - strand, within ABZR86_RS16570at 3742.071 kb on + strand, within ABZR86_RS16570at 3742.071 kb on + strand, within ABZR86_RS16570at 3742.177 kb on - strandat 3742.288 kb on - strand, within ABZR86_RS16575at 3742.352 kb on - strand, within ABZR86_RS16575at 3742.711 kb on + strandat 3742.712 kb on - strandat 3742.936 kb on + strand, within ABZR86_RS16580at 3742.937 kb on - strand, within ABZR86_RS16580at 3742.969 kb on + strand, within ABZR86_RS16580at 3742.978 kb on + strand, within ABZR86_RS16580at 3742.979 kb on - strand, within ABZR86_RS16580at 3743.054 kb on - strand, within ABZR86_RS16580at 3743.273 kb on + strand, within ABZR86_RS16580at 3743.274 kb on - strand, within ABZR86_RS16580at 3743.290 kb on + strand, within ABZR86_RS16580at 3743.312 kb on + strand, within ABZR86_RS16580at 3743.313 kb on - strand, within ABZR86_RS16580at 3743.509 kb on + strandat 3743.510 kb on - strandat 3743.510 kb on - strandat 3743.666 kb on - strand, within ABZR86_RS16585at 3743.735 kb on - strand, within ABZR86_RS16585at 3743.735 kb on - strand, within ABZR86_RS16585at 3743.849 kb on - strand, within ABZR86_RS16585at 3743.849 kb on - strand, within ABZR86_RS16585at 3743.962 kb on + strand, within ABZR86_RS16585at 3743.962 kb on + strand, within ABZR86_RS16585at 3743.963 kb on - strand, within ABZR86_RS16585at 3743.963 kb on - strand, within ABZR86_RS16585at 3744.139 kb on + strandat 3744.217 kb on - strandat 3744.251 kb on + strandat 3744.251 kb on + strandat 3744.345 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
3,741,966 + ABZR86_RS16570 0.70 +0.9
3,741,982 - ABZR86_RS16570 0.73 +0.0
3,741,996 + ABZR86_RS16570 0.75 +0.8
3,741,996 + ABZR86_RS16570 0.75 -0.2
3,741,997 - ABZR86_RS16570 0.75 +0.6
3,741,997 - ABZR86_RS16570 0.75 +0.8
3,741,997 - ABZR86_RS16570 0.75 +1.1
3,742,071 + ABZR86_RS16570 0.86 +0.1
3,742,071 + ABZR86_RS16570 0.86 -1.4
3,742,177 - -0.9
3,742,288 - ABZR86_RS16575 0.21 +0.5
3,742,352 - ABZR86_RS16575 0.33 -0.6
3,742,711 + -0.6
3,742,712 - -2.2
3,742,936 + ABZR86_RS16580 0.24 +1.3
3,742,937 - ABZR86_RS16580 0.24 -0.2
3,742,969 + ABZR86_RS16580 0.29 -0.2
3,742,978 + ABZR86_RS16580 0.31 -1.1
3,742,979 - ABZR86_RS16580 0.31 +0.5
3,743,054 - ABZR86_RS16580 0.42 -0.8
3,743,273 + ABZR86_RS16580 0.75 -1.2
3,743,274 - ABZR86_RS16580 0.75 -1.2
3,743,290 + ABZR86_RS16580 0.78 -1.1
3,743,312 + ABZR86_RS16580 0.81 -0.1
3,743,313 - ABZR86_RS16580 0.81 -0.0
3,743,509 + -0.6
3,743,510 - +0.6
3,743,510 - -2.8
3,743,666 - ABZR86_RS16585 0.33 -0.6
3,743,735 - ABZR86_RS16585 0.44 -3.1
3,743,735 - ABZR86_RS16585 0.44 -0.4
3,743,849 - ABZR86_RS16585 0.62 -2.9
3,743,849 - ABZR86_RS16585 0.62 +1.1
3,743,962 + ABZR86_RS16585 0.79 -1.0
3,743,962 + ABZR86_RS16585 0.79 -2.8
3,743,963 - ABZR86_RS16585 0.79 -0.8
3,743,963 - ABZR86_RS16585 0.79 -1.2
3,744,139 + +1.5
3,744,217 - +1.6
3,744,251 + +0.1
3,744,251 + -3.0
3,744,345 + -0.8

Or see this region's nucleotide sequence