Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16175

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16165 and ABZR86_RS16170 overlap by 4 nucleotidesABZR86_RS16170 and ABZR86_RS16175 are separated by 345 nucleotidesABZR86_RS16175 and ABZR86_RS16180 are separated by 477 nucleotides ABZR86_RS16165: ABZR86_RS16165 - diguanylate cyclase, at 3,651,447 to 3,653,255 _RS16165 ABZR86_RS16170: ABZR86_RS16170 - hypothetical protein, at 3,653,252 to 3,653,539 _RS16170 ABZR86_RS16175: ABZR86_RS16175 - hypothetical protein, at 3,653,885 to 3,654,145 _RS16175 ABZR86_RS16180: ABZR86_RS16180 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,654,623 to 3,655,900 _RS16180 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3652.898 kb on + strand, within ABZR86_RS16165at 3652.898 kb on + strand, within ABZR86_RS16165at 3652.987 kb on + strand, within ABZR86_RS16165at 3652.988 kb on - strand, within ABZR86_RS16165at 3652.996 kb on + strand, within ABZR86_RS16165at 3652.996 kb on + strand, within ABZR86_RS16165at 3652.997 kb on - strand, within ABZR86_RS16165at 3652.999 kb on + strand, within ABZR86_RS16165at 3652.999 kb on + strand, within ABZR86_RS16165at 3652.999 kb on + strand, within ABZR86_RS16165at 3652.999 kb on + strand, within ABZR86_RS16165at 3653.000 kb on - strand, within ABZR86_RS16165at 3653.000 kb on - strand, within ABZR86_RS16165at 3653.000 kb on - strand, within ABZR86_RS16165at 3653.023 kb on + strand, within ABZR86_RS16165at 3653.648 kb on + strandat 3653.794 kb on + strandat 3653.794 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.846 kb on - strandat 3653.846 kb on - strandat 3654.233 kb on + strandat 3654.233 kb on + strandat 3654.258 kb on + strandat 3654.258 kb on + strandat 3654.258 kb on + strandat 3654.258 kb on + strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.261 kb on - strandat 3654.261 kb on - strandat 3654.261 kb on - strandat 3654.261 kb on - strandat 3654.320 kb on + strandat 3654.376 kb on + strandat 3654.377 kb on - strandat 3654.377 kb on - strandat 3654.401 kb on + strandat 3654.474 kb on + strandat 3654.475 kb on - strandat 3654.475 kb on - strandat 3654.475 kb on - strandat 3654.475 kb on - strandat 3654.570 kb on + strandat 3654.570 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.621 kb on - strandat 3654.621 kb on - strandat 3654.669 kb on - strandat 3654.669 kb on - strandat 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,652,898 + ABZR86_RS16165 0.80 +0.6
3,652,898 + ABZR86_RS16165 0.80 -1.1
3,652,987 + ABZR86_RS16165 0.85 -0.6
3,652,988 - ABZR86_RS16165 0.85 -0.7
3,652,996 + ABZR86_RS16165 0.86 +1.0
3,652,996 + ABZR86_RS16165 0.86 +2.9
3,652,997 - ABZR86_RS16165 0.86 -2.7
3,652,999 + ABZR86_RS16165 0.86 -0.8
3,652,999 + ABZR86_RS16165 0.86 +1.4
3,652,999 + ABZR86_RS16165 0.86 -0.7
3,652,999 + ABZR86_RS16165 0.86 -3.4
3,653,000 - ABZR86_RS16165 0.86 -2.5
3,653,000 - ABZR86_RS16165 0.86 -2.7
3,653,000 - ABZR86_RS16165 0.86 +0.5
3,653,023 + ABZR86_RS16165 0.87 +0.8
3,653,648 + -0.4
3,653,794 + -2.3
3,653,794 + -3.0
3,653,845 + -0.5
3,653,845 + -2.0
3,653,845 + -1.6
3,653,845 + -0.2
3,653,845 + -0.5
3,653,845 + +0.2
3,653,845 + -0.4
3,653,845 + -1.1
3,653,845 + -0.1
3,653,845 + -1.4
3,653,846 - -1.6
3,653,846 - +0.9
3,654,233 + +0.9
3,654,233 + +0.1
3,654,258 + -0.1
3,654,258 + -0.4
3,654,258 + -0.1
3,654,258 + -3.1
3,654,259 - -0.8
3,654,259 - +0.1
3,654,259 - -0.3
3,654,259 - -0.9
3,654,259 - +2.0
3,654,260 + +1.2
3,654,260 + +1.5
3,654,260 + +0.7
3,654,260 + +1.2
3,654,260 + +1.3
3,654,260 + -3.1
3,654,261 - +0.7
3,654,261 - -3.5
3,654,261 - -0.0
3,654,261 - -0.3
3,654,320 + -0.3
3,654,376 + +0.8
3,654,377 - -4.1
3,654,377 - -1.5
3,654,401 + +0.2
3,654,474 + +0.7
3,654,475 - +0.6
3,654,475 - +0.4
3,654,475 - -0.4
3,654,475 - -0.0
3,654,570 + +1.2
3,654,570 + -3.1
3,654,620 + +0.0
3,654,620 + +0.3
3,654,620 + +1.5
3,654,620 + +0.2
3,654,620 + -0.0
3,654,620 + +1.6
3,654,620 + -3.6
3,654,621 - +0.4
3,654,621 - +2.0
3,654,669 - -1.1
3,654,669 - -1.5
3,654,974 + ABZR86_RS16180 0.27 +1.1
3,654,974 + ABZR86_RS16180 0.27 +1.0
3,654,974 + ABZR86_RS16180 0.27 +1.7
3,654,974 + ABZR86_RS16180 0.27 -0.8
3,654,974 + ABZR86_RS16180 0.27 +1.3

Or see this region's nucleotide sequence