Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14625

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14620 and ABZR86_RS14625 are separated by 222 nucleotidesABZR86_RS14625 and ABZR86_RS14630 are separated by 558 nucleotides ABZR86_RS14620: ABZR86_RS14620 - response regulator transcription factor, at 3,269,766 to 3,270,401 _RS14620 ABZR86_RS14625: ABZR86_RS14625 - EF-hand domain-containing protein, at 3,270,624 to 3,270,935 _RS14625 ABZR86_RS14630: ABZR86_RS14630 - serine protease, at 3,271,494 to 3,273,470 _RS14630 Position (kb) 3270 3271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3270.017 kb on + strand, within ABZR86_RS14620at 3270.109 kb on + strand, within ABZR86_RS14620at 3270.110 kb on - strand, within ABZR86_RS14620at 3270.111 kb on + strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.312 kb on + strand, within ABZR86_RS14620at 3270.313 kb on - strand, within ABZR86_RS14620at 3270.431 kb on + strandat 3270.435 kb on - strandat 3270.435 kb on - strandat 3270.439 kb on + strandat 3270.439 kb on + strandat 3270.439 kb on + strandat 3270.439 kb on + strandat 3270.440 kb on - strandat 3270.440 kb on - strandat 3270.440 kb on - strandat 3270.462 kb on + strandat 3270.463 kb on - strandat 3270.463 kb on - strandat 3270.705 kb on + strand, within ABZR86_RS14625at 3270.716 kb on + strand, within ABZR86_RS14625at 3270.961 kb on - strandat 3270.961 kb on - strandat 3270.961 kb on - strandat 3270.964 kb on - strandat 3271.477 kb on + strandat 3271.495 kb on + strandat 3271.496 kb on - strandat 3271.591 kb on + strandat 3271.591 kb on + strandat 3271.592 kb on - strandat 3271.596 kb on - strandat 3271.712 kb on - strand, within ABZR86_RS14630at 3271.857 kb on + strand, within ABZR86_RS14630at 3271.858 kb on - strand, within ABZR86_RS14630at 3271.930 kb on + strand, within ABZR86_RS14630at 3271.930 kb on + strand, within ABZR86_RS14630at 3271.930 kb on + strand, within ABZR86_RS14630

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,270,017 + ABZR86_RS14620 0.39 +1.7
3,270,109 + ABZR86_RS14620 0.54 -0.8
3,270,110 - ABZR86_RS14620 0.54 +0.0
3,270,111 + ABZR86_RS14620 0.54 -0.4
3,270,112 - ABZR86_RS14620 0.54 +0.2
3,270,112 - ABZR86_RS14620 0.54 -3.0
3,270,112 - ABZR86_RS14620 0.54 +0.5
3,270,112 - ABZR86_RS14620 0.54 +1.3
3,270,312 + ABZR86_RS14620 0.86 +1.0
3,270,313 - ABZR86_RS14620 0.86 +0.4
3,270,431 + +1.1
3,270,435 - +1.0
3,270,435 - +0.6
3,270,439 + -0.1
3,270,439 + +0.4
3,270,439 + +0.0
3,270,439 + -2.1
3,270,440 - -1.8
3,270,440 - -3.5
3,270,440 - +1.1
3,270,462 + +0.4
3,270,463 - +1.2
3,270,463 - +0.3
3,270,705 + ABZR86_RS14625 0.26 -0.5
3,270,716 + ABZR86_RS14625 0.29 +0.8
3,270,961 - -0.2
3,270,961 - +0.5
3,270,961 - +0.6
3,270,964 - -4.2
3,271,477 + -3.0
3,271,495 + -0.0
3,271,496 - -0.6
3,271,591 + +0.3
3,271,591 + -0.6
3,271,592 - -0.2
3,271,596 - -2.3
3,271,712 - ABZR86_RS14630 0.11 +0.6
3,271,857 + ABZR86_RS14630 0.18 -0.0
3,271,858 - ABZR86_RS14630 0.18 -0.4
3,271,930 + ABZR86_RS14630 0.22 +0.5
3,271,930 + ABZR86_RS14630 0.22 +1.5
3,271,930 + ABZR86_RS14630 0.22 +0.5

Or see this region's nucleotide sequence