Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11910

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS11900 and ABZR86_RS11905 are separated by 2 nucleotidesABZR86_RS11905 and ABZR86_RS11910 are separated by 2 nucleotidesABZR86_RS11910 and ABZR86_RS11915 are separated by 89 nucleotides ABZR86_RS11900: ABZR86_RS11900 - ribonuclease PH, at 2,667,395 to 2,668,126 _RS11900 ABZR86_RS11905: ABZR86_RS11905 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,668,129 to 2,668,737 _RS11905 ABZR86_RS11910: ABZR86_RS11910 - radical SAM family heme chaperone HemW, at 2,668,740 to 2,669,906 _RS11910 ABZR86_RS11915: ABZR86_RS11915 - DUF1631 family protein, at 2,669,996 to 2,671,105 _RS11915 Position (kb) 2668 2669 2670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2667.806 kb on + strand, within ABZR86_RS11900at 2667.806 kb on + strand, within ABZR86_RS11900at 2667.806 kb on + strand, within ABZR86_RS11900at 2667.905 kb on + strand, within ABZR86_RS11900at 2667.905 kb on + strand, within ABZR86_RS11900at 2667.906 kb on - strand, within ABZR86_RS11900at 2667.906 kb on - strand, within ABZR86_RS11900at 2667.906 kb on - strand, within ABZR86_RS11900at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.261 kb on - strand, within ABZR86_RS11905at 2668.390 kb on + strand, within ABZR86_RS11905at 2668.390 kb on + strand, within ABZR86_RS11905at 2668.594 kb on + strand, within ABZR86_RS11905at 2668.771 kb on - strandat 2668.806 kb on + strandat 2668.852 kb on - strandat 2668.860 kb on + strand, within ABZR86_RS11910at 2668.860 kb on + strand, within ABZR86_RS11910at 2668.861 kb on - strand, within ABZR86_RS11910at 2668.861 kb on - strand, within ABZR86_RS11910at 2668.861 kb on - strand, within ABZR86_RS11910at 2669.094 kb on + strand, within ABZR86_RS11910at 2669.095 kb on - strand, within ABZR86_RS11910at 2669.253 kb on + strand, within ABZR86_RS11910at 2669.253 kb on + strand, within ABZR86_RS11910at 2669.254 kb on - strand, within ABZR86_RS11910at 2669.254 kb on - strand, within ABZR86_RS11910at 2669.254 kb on - strand, within ABZR86_RS11910at 2669.254 kb on - strand, within ABZR86_RS11910at 2669.254 kb on - strand, within ABZR86_RS11910at 2669.337 kb on + strand, within ABZR86_RS11910at 2669.337 kb on + strand, within ABZR86_RS11910at 2669.479 kb on - strand, within ABZR86_RS11910at 2669.508 kb on - strand, within ABZR86_RS11910at 2669.508 kb on - strand, within ABZR86_RS11910at 2669.518 kb on - strand, within ABZR86_RS11910at 2669.518 kb on - strand, within ABZR86_RS11910at 2669.535 kb on + strand, within ABZR86_RS11910at 2669.536 kb on - strand, within ABZR86_RS11910at 2669.536 kb on - strand, within ABZR86_RS11910at 2669.703 kb on + strand, within ABZR86_RS11910at 2669.703 kb on + strand, within ABZR86_RS11910at 2669.704 kb on - strand, within ABZR86_RS11910at 2669.704 kb on - strand, within ABZR86_RS11910at 2669.704 kb on - strand, within ABZR86_RS11910at 2669.955 kb on + strandat 2669.956 kb on - strandat 2669.956 kb on - strandat 2670.212 kb on + strand, within ABZR86_RS11915at 2670.212 kb on + strand, within ABZR86_RS11915at 2670.212 kb on + strand, within ABZR86_RS11915at 2670.212 kb on + strand, within ABZR86_RS11915at 2670.212 kb on + strand, within ABZR86_RS11915at 2670.212 kb on + strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915at 2670.213 kb on - strand, within ABZR86_RS11915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
2,667,806 + ABZR86_RS11900 0.56 +2.0
2,667,806 + ABZR86_RS11900 0.56 -0.8
2,667,806 + ABZR86_RS11900 0.56 -1.3
2,667,905 + ABZR86_RS11900 0.70 -0.4
2,667,905 + ABZR86_RS11900 0.70 -2.5
2,667,906 - ABZR86_RS11900 0.70 +1.4
2,667,906 - ABZR86_RS11900 0.70 -0.8
2,667,906 - ABZR86_RS11900 0.70 -0.6
2,668,260 + ABZR86_RS11905 0.22 -3.2
2,668,260 + ABZR86_RS11905 0.22 +1.2
2,668,260 + ABZR86_RS11905 0.22 +0.7
2,668,260 + ABZR86_RS11905 0.22 -2.0
2,668,260 + ABZR86_RS11905 0.22 -1.5
2,668,260 + ABZR86_RS11905 0.22 +0.9
2,668,260 + ABZR86_RS11905 0.22 +2.2
2,668,261 - ABZR86_RS11905 0.22 +0.2
2,668,390 + ABZR86_RS11905 0.43 +0.4
2,668,390 + ABZR86_RS11905 0.43 +0.9
2,668,594 + ABZR86_RS11905 0.76 +1.0
2,668,771 - +0.4
2,668,806 + -0.1
2,668,852 - +1.8
2,668,860 + ABZR86_RS11910 0.10 -0.7
2,668,860 + ABZR86_RS11910 0.10 +2.4
2,668,861 - ABZR86_RS11910 0.10 -0.4
2,668,861 - ABZR86_RS11910 0.10 -2.8
2,668,861 - ABZR86_RS11910 0.10 -2.6
2,669,094 + ABZR86_RS11910 0.30 -3.3
2,669,095 - ABZR86_RS11910 0.30 +0.1
2,669,253 + ABZR86_RS11910 0.44 +0.6
2,669,253 + ABZR86_RS11910 0.44 -0.4
2,669,254 - ABZR86_RS11910 0.44 -3.2
2,669,254 - ABZR86_RS11910 0.44 -0.3
2,669,254 - ABZR86_RS11910 0.44 -1.3
2,669,254 - ABZR86_RS11910 0.44 +0.6
2,669,254 - ABZR86_RS11910 0.44 -0.1
2,669,337 + ABZR86_RS11910 0.51 +2.0
2,669,337 + ABZR86_RS11910 0.51 -0.8
2,669,479 - ABZR86_RS11910 0.63 -0.7
2,669,508 - ABZR86_RS11910 0.66 +0.5
2,669,508 - ABZR86_RS11910 0.66 +1.4
2,669,518 - ABZR86_RS11910 0.67 -1.8
2,669,518 - ABZR86_RS11910 0.67 -3.4
2,669,535 + ABZR86_RS11910 0.68 +0.4
2,669,536 - ABZR86_RS11910 0.68 +0.4
2,669,536 - ABZR86_RS11910 0.68 -0.4
2,669,703 + ABZR86_RS11910 0.83 -0.3
2,669,703 + ABZR86_RS11910 0.83 +0.5
2,669,704 - ABZR86_RS11910 0.83 +0.1
2,669,704 - ABZR86_RS11910 0.83 -0.5
2,669,704 - ABZR86_RS11910 0.83 +0.3
2,669,955 + +0.5
2,669,956 - -0.8
2,669,956 - +0.4
2,670,212 + ABZR86_RS11915 0.19 +0.6
2,670,212 + ABZR86_RS11915 0.19 +1.8
2,670,212 + ABZR86_RS11915 0.19 +0.2
2,670,212 + ABZR86_RS11915 0.19 -1.0
2,670,212 + ABZR86_RS11915 0.19 -0.0
2,670,212 + ABZR86_RS11915 0.19 -0.1
2,670,213 - ABZR86_RS11915 0.20 -3.7
2,670,213 - ABZR86_RS11915 0.20 -0.2
2,670,213 - ABZR86_RS11915 0.20 -3.7
2,670,213 - ABZR86_RS11915 0.20 -0.5
2,670,213 - ABZR86_RS11915 0.20 +0.5
2,670,213 - ABZR86_RS11915 0.20 -0.0
2,670,213 - ABZR86_RS11915 0.20 +0.3
2,670,213 - ABZR86_RS11915 0.20 +0.1

Or see this region's nucleotide sequence