Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07890

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07885 and ABZR86_RS07890 are separated by 49 nucleotidesABZR86_RS07890 and ABZR86_RS07895 are separated by 124 nucleotides ABZR86_RS07885: ABZR86_RS07885 - cation diffusion facilitator family transporter, at 1,752,782 to 1,753,765 _RS07885 ABZR86_RS07890: ABZR86_RS07890 - MerC domain-containing protein, at 1,753,815 to 1,754,237 _RS07890 ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362 _RS07895 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1753.232 kb on + strand, within ABZR86_RS07885at 1753.233 kb on - strand, within ABZR86_RS07885at 1753.233 kb on - strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.776 kb on + strandat 1753.777 kb on - strandat 1753.777 kb on - strandat 1753.777 kb on - strandat 1753.940 kb on - strand, within ABZR86_RS07890at 1754.250 kb on - strandat 1754.340 kb on + strandat 1754.341 kb on - strandat 1755.025 kb on + strand, within ABZR86_RS07895at 1755.025 kb on + strand, within ABZR86_RS07895at 1755.025 kb on + strand, within ABZR86_RS07895at 1755.025 kb on + strand, within ABZR86_RS07895at 1755.113 kb on - strand, within ABZR86_RS07895at 1755.136 kb on + strand, within ABZR86_RS07895at 1755.148 kb on + strand, within ABZR86_RS07895at 1755.149 kb on - strand, within ABZR86_RS07895at 1755.223 kb on + strand, within ABZR86_RS07895at 1755.224 kb on - strand, within ABZR86_RS07895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,753,232 + ABZR86_RS07885 0.46 +0.3
1,753,233 - ABZR86_RS07885 0.46 -1.1
1,753,233 - ABZR86_RS07885 0.46 -0.2
1,753,467 + ABZR86_RS07885 0.70 +0.8
1,753,467 + ABZR86_RS07885 0.70 -4.2
1,753,467 + ABZR86_RS07885 0.70 -2.6
1,753,467 + ABZR86_RS07885 0.70 +0.9
1,753,468 - ABZR86_RS07885 0.70 -1.6
1,753,468 - ABZR86_RS07885 0.70 +1.8
1,753,468 - ABZR86_RS07885 0.70 -4.1
1,753,468 - ABZR86_RS07885 0.70 -1.5
1,753,468 - ABZR86_RS07885 0.70 -0.9
1,753,468 - ABZR86_RS07885 0.70 -3.3
1,753,468 - ABZR86_RS07885 0.70 -3.9
1,753,776 + -3.5
1,753,777 - -0.3
1,753,777 - -3.6
1,753,777 - +0.7
1,753,940 - ABZR86_RS07890 0.30 -0.8
1,754,250 - +1.1
1,754,340 + +0.1
1,754,341 - +1.5
1,755,025 + ABZR86_RS07895 0.33 +0.3
1,755,025 + ABZR86_RS07895 0.33 -3.7
1,755,025 + ABZR86_RS07895 0.33 +0.4
1,755,025 + ABZR86_RS07895 0.33 +0.6
1,755,113 - ABZR86_RS07895 0.38 -0.7
1,755,136 + ABZR86_RS07895 0.39 +0.9
1,755,148 + ABZR86_RS07895 0.39 -2.8
1,755,149 - ABZR86_RS07895 0.39 -0.4
1,755,223 + ABZR86_RS07895 0.43 +0.7
1,755,224 - ABZR86_RS07895 0.43 -0.9

Or see this region's nucleotide sequence