Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05195 and ABZR86_RS05200 are separated by 338 nucleotides ABZR86_RS05200 and ABZR86_RS05205 are separated by 9 nucleotides ABZR86_RS05205 and ABZR86_RS05210 are separated by 4 nucleotides ABZR86_RS05210 and ABZR86_RS05215 are separated by 175 nucleotides
ABZR86_RS05195: ABZR86_RS05195 - ATP-dependent RNA helicase DbpA, at 1,174,712 to 1,176,091
_RS05195
ABZR86_RS05200: ABZR86_RS05200 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,176,430 to 1,176,708
_RS05200
ABZR86_RS05205: ABZR86_RS05205 - HigA family addiction module antitoxin, at 1,176,718 to 1,177,002
_RS05205
ABZR86_RS05210: ABZR86_RS05210 - hypothetical protein, at 1,177,007 to 1,177,495
_RS05210
ABZR86_RS05215: ABZR86_RS05215 - O-acetyl-ADP-ribose deacetylase, at 1,177,671 to 1,178,201
_RS05215
Position (kb) 1176
1177
1178 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1176.136 kb on - strand at 1176.197 kb on + strand at 1176.197 kb on + strand at 1176.197 kb on + strand at 1176.197 kb on + strand at 1176.198 kb on - strand at 1176.198 kb on - strand at 1176.201 kb on + strand at 1176.201 kb on + strand at 1176.226 kb on + strand at 1176.248 kb on - strand at 1176.323 kb on - strand at 1176.531 kb on + strand, within ABZR86_RS05200 at 1176.532 kb on - strand, within ABZR86_RS05200 at 1176.532 kb on - strand, within ABZR86_RS05200 at 1176.691 kb on + strand at 1176.692 kb on - strand at 1176.713 kb on + strand at 1176.713 kb on + strand at 1176.713 kb on + strand at 1176.713 kb on + strand at 1176.714 kb on - strand at 1176.714 kb on - strand at 1176.714 kb on - strand at 1176.733 kb on - strand at 1176.756 kb on - strand, within ABZR86_RS05205 at 1176.759 kb on - strand, within ABZR86_RS05205 at 1176.759 kb on - strand, within ABZR86_RS05205 at 1176.766 kb on + strand, within ABZR86_RS05205 at 1176.767 kb on - strand, within ABZR86_RS05205 at 1176.767 kb on - strand, within ABZR86_RS05205 at 1176.767 kb on - strand, within ABZR86_RS05205 at 1177.042 kb on + strand at 1177.043 kb on - strand at 1177.054 kb on + strand at 1177.183 kb on - strand, within ABZR86_RS05210 at 1177.320 kb on + strand, within ABZR86_RS05210 at 1177.330 kb on + strand, within ABZR86_RS05210 at 1177.401 kb on - strand, within ABZR86_RS05210 at 1177.459 kb on + strand at 1177.460 kb on - strand at 1177.621 kb on + strand at 1177.622 kb on - strand at 1177.622 kb on - strand at 1177.622 kb on - strand at 1177.622 kb on - strand at 1177.631 kb on + strand at 1177.632 kb on - strand at 1177.633 kb on + strand at 1177.633 kb on + strand at 1177.633 kb on + strand at 1177.633 kb on + strand at 1177.633 kb on + strand at 1177.633 kb on + strand at 1177.634 kb on - strand at 1177.654 kb on - strand at 1177.660 kb on + strand at 1177.661 kb on - strand at 1177.661 kb on - strand at 1177.662 kb on + strand at 1177.662 kb on + strand at 1177.662 kb on + strand at 1177.662 kb on + strand at 1177.663 kb on - strand at 1177.715 kb on - strand at 1177.837 kb on + strand, within ABZR86_RS05215 at 1177.838 kb on - strand, within ABZR86_RS05215 at 1177.838 kb on - strand, within ABZR86_RS05215 at 1177.838 kb on - strand, within ABZR86_RS05215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,176,136 - -3.1 1,176,197 + +0.1 1,176,197 + -0.3 1,176,197 + -0.1 1,176,197 + +0.8 1,176,198 - -3.3 1,176,198 - +1.2 1,176,201 + -0.0 1,176,201 + -0.3 1,176,226 + -2.8 1,176,248 - -0.7 1,176,323 - +0.8 1,176,531 + ABZR86_RS05200 0.36 +0.0 1,176,532 - ABZR86_RS05200 0.37 -1.6 1,176,532 - ABZR86_RS05200 0.37 +1.5 1,176,691 + -2.1 1,176,692 - +1.6 1,176,713 + -1.1 1,176,713 + -0.1 1,176,713 + -2.0 1,176,713 + -1.4 1,176,714 - +0.4 1,176,714 - +0.6 1,176,714 - -0.1 1,176,733 - +2.3 1,176,756 - ABZR86_RS05205 0.13 -0.7 1,176,759 - ABZR86_RS05205 0.14 -0.6 1,176,759 - ABZR86_RS05205 0.14 +0.1 1,176,766 + ABZR86_RS05205 0.17 +0.7 1,176,767 - ABZR86_RS05205 0.17 -0.0 1,176,767 - ABZR86_RS05205 0.17 -1.4 1,176,767 - ABZR86_RS05205 0.17 -0.8 1,177,042 + -0.4 1,177,043 - +0.5 1,177,054 + +0.3 1,177,183 - ABZR86_RS05210 0.36 -1.0 1,177,320 + ABZR86_RS05210 0.64 -2.3 1,177,330 + ABZR86_RS05210 0.66 -1.1 1,177,401 - ABZR86_RS05210 0.81 -0.5 1,177,459 + +0.5 1,177,460 - -2.1 1,177,621 + -0.6 1,177,622 - +2.3 1,177,622 - -1.0 1,177,622 - -0.2 1,177,622 - +1.6 1,177,631 + +1.0 1,177,632 - +1.0 1,177,633 + +0.1 1,177,633 + -1.3 1,177,633 + +0.1 1,177,633 + +1.2 1,177,633 + +2.2 1,177,633 + -4.3 1,177,634 - +0.0 1,177,654 - -2.4 1,177,660 + -2.3 1,177,661 - -3.2 1,177,661 - -0.5 1,177,662 + -3.1 1,177,662 + +0.5 1,177,662 + -4.0 1,177,662 + -1.9 1,177,663 - -0.6 1,177,715 - -0.2 1,177,837 + ABZR86_RS05215 0.31 +1.7 1,177,838 - ABZR86_RS05215 0.31 +1.6 1,177,838 - ABZR86_RS05215 0.31 +1.7 1,177,838 - ABZR86_RS05215 0.31 -3.2
Or see this region's nucleotide sequence