Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4128

Experiment: methylglyoxal 0.004 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4127 and Shewana3_4128 are separated by 259 nucleotidesShewana3_4128 and atpC are separated by 169 nucleotidesatpC and Shewana3_4130 are separated by 36 nucleotides Shewana3_4127: Shewana3_4127 - TonB-dependent siderophore receptor (RefSeq), at 4,959,434 to 4,961,542 _4127 Shewana3_4128: Shewana3_4128 - glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 4,961,802 to 4,963,166 _4128 Shewana3_4129: atpC - F0F1 ATP synthase subunit epsilon (RefSeq), at 4,963,336 to 4,963,764 atpC Shewana3_4130: Shewana3_4130 - F0F1 ATP synthase subunit beta (RefSeq), at 4,963,801 to 4,965,192 _4130 Position (kb) 4961 4962 4963 4964Strain fitness (log2 ratio) -1 0 1at 4960.884 kb on - strand, within Shewana3_4127at 4961.141 kb on + strand, within Shewana3_4127at 4961.152 kb on + strand, within Shewana3_4127at 4961.512 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
remove
4,960,884 - Shewana3_4127 0.69 -0.1
4,961,141 + Shewana3_4127 0.81 -0.1
4,961,152 + Shewana3_4127 0.81 -0.7
4,961,512 - +0.0

Or see this region's nucleotide sequence