Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4111 and Shewana3_4112 are separated by 108 nucleotides Shewana3_4112 and Shewana3_4113 are separated by 421 nucleotides Shewana3_4113 and Shewana3_4114 are separated by 82 nucleotides Shewana3_4114 and Shewana3_4115 are separated by 68 nucleotides
Shewana3_4111: Shewana3_4111 - cytochrome c, class I (RefSeq), at 4,935,890 to 4,936,513
_4111
Shewana3_4112: Shewana3_4112 - hypothetical protein (RefSeq), at 4,936,622 to 4,936,915
_4112
Shewana3_4113: Shewana3_4113 - hypothetical protein (RefSeq), at 4,937,337 to 4,937,975
_4113
Shewana3_4114: Shewana3_4114 - hypothetical protein (RefSeq), at 4,938,058 to 4,938,612
_4114
Shewana3_4115: Shewana3_4115 - hypothetical protein (RefSeq), at 4,938,681 to 4,939,148
_4115
Position (kb)
4937
4938 Strain fitness (log2 ratio)
-2
-1
0
1 at 4936.568 kb on + strand at 4936.637 kb on - strand at 4937.038 kb on + strand at 4937.256 kb on - strand at 4937.299 kb on - strand at 4937.352 kb on - strand at 4937.439 kb on - strand, within Shewana3_4113 at 4937.644 kb on + strand, within Shewana3_4113 at 4937.652 kb on - strand, within Shewana3_4113 at 4937.744 kb on + strand, within Shewana3_4113 at 4937.901 kb on - strand, within Shewana3_4113 at 4938.010 kb on - strand at 4938.237 kb on + strand, within Shewana3_4114 at 4938.699 kb on - strand at 4938.760 kb on - strand, within Shewana3_4115
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 4,936,568 + -2.5 4,936,637 - +1.2 4,937,038 + +1.5 4,937,256 - +1.6 4,937,299 - +1.2 4,937,352 - +0.7 4,937,439 - Shewana3_4113 0.16 +0.5 4,937,644 + Shewana3_4113 0.48 +0.4 4,937,652 - Shewana3_4113 0.49 +1.0 4,937,744 + Shewana3_4113 0.64 -0.1 4,937,901 - Shewana3_4113 0.88 +0.8 4,938,010 - +0.4 4,938,237 + Shewana3_4114 0.32 -1.9 4,938,699 - +0.8 4,938,760 - Shewana3_4115 0.17 +0.3
Or see this region's nucleotide sequence